Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18i19
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 30 0.21
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 30 0.21
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 0.65
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 28 0.86
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 3.5
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 3.5
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 4.6
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 8.0
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 25 8.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 8.0
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 29.9 bits (64), Expect = 0.21
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 419 DMLFDRVSEAPLDEAVMWIIW 481
D LFD +S +PL E V WI W
Sbjct: 24 DELFDDLSSSPLHENVSWISW 44
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 29.9 bits (64), Expect = 0.21
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -1
Query: 402 DEAVKKLMFRNLAALPIIAAKGS 334
+EA L+ R+L+ALPI+AAKGS
Sbjct: 65 EEASSILIDRDLSALPIVAAKGS 87
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 0.65
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 250 LKWSKKHRVGNKHSAQEEYPSEETFEEQDFPSALSL*ERFPN*NI-RVLLES 98
L W+KKH GN +++ + ++++ +AL++ R N NI VL+++
Sbjct: 455 LNWAKKHASGNNGYMLKDFINYLNHQDKNGDTALNIAARIGNKNIVEVLMQA 506
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 0.86
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 268 RRLRFGLKWSKKHRVGNKHSAQEEYPSEETFEEQD 164
RR R G +S+ R+ K+ QEE E EE+D
Sbjct: 48 RRQRHGRTFSEDERLEVKNKVQEEVKEESEDEEED 82
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 122 LIWKSFLQRQRRWKILLFEGLFAGILFLSAVFIANPVFLTPLQ 250
++ SFL R + ++ GLF GIL ++ + + V P+Q
Sbjct: 365 ILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVLDAVHKLPMQ 407
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 426 NISFRPFSDEAVKKLMFRN-LAALPIIAAKGSVLGAYPIIVLRF 298
N+SFR + V+K +F N L ALP K + + LR+
Sbjct: 70 NVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRW 113
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 313 YSSSVQRNQYVSCCKRRLRFGLKWSKKHRV-GNKHSAQEEYPSEET 179
+S + +Q + C R ++ + + + G++HSA EEY +T
Sbjct: 441 FSLQREHSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKT 486
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 137 FLQRQRRWKILLFEGLFAGILFLSAVFIANPVFLTPLQAEPE 262
F+ ++ K + F FAGILF + V + +P +T L +PE
Sbjct: 35 FVNKELYNKYIAFTKSFAGILFTALVQLFSPTPVT-LTYDPE 75
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 423 ISFRPFSDEAVKKLMFRNLAALPIIAAKGSVLGAYP 316
+ F F E +K+++ + L +P+ + +LG YP
Sbjct: 196 LGFMEFRPEELKEVLAQVLQEIPLQDYRVPILGTYP 231
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 228 GLAINTALRKSIPAKRPSKSRIFHRRCLCKNDFQIKIFVCF 106
G+ + L IP RPS H+ NDFQ+ V +
Sbjct: 117 GILSASGLTSPIPESRPSTPMDNHQERDRSNDFQVTAHVSY 157
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 175 RRSLRWDTLPERCVYCQPCV 234
R LRW T+P+ +Y P +
Sbjct: 237 RNPLRWPTVPQAVIYNSPYI 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,927
Number of Sequences: 5004
Number of extensions: 35537
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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