Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18i16
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.057
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.1
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 2.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 2.8
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 3.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.9
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 4.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 4.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 6.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.6
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 32.3 bits (70), Expect = 0.057
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 204 LGMMKQFVKALDKNNATFEYLCKKIPRLSDAKIKGVFDGPQIRSLMADEE 353
L + +VKAL++ +A +E L K L D+ + +FDG S+ A E
Sbjct: 211 LSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTATVE 260
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/74 (18%), Positives = 34/74 (45%)
Frame = +3
Query: 156 NLISPEKILLPPLHIKLGMMKQFVKALDKNNATFEYLCKKIPRLSDAKIKGVFDGPQIRS 335
+LI+ + ++ P + + + L++ ++ +Y CKKI + ++ +D Q+
Sbjct: 215 SLINTKTVIFPENYEDGPSFRSMLHELEQKSSLMKYYCKKIMK-RIVQLSDAYDASQVAV 273
Query: 336 LMADEEFDATMNNT 377
+ E N+T
Sbjct: 274 MKLSETLSEASNST 287
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 453 NKVANLLDKYQKLGCNMSIKLHFLDSHVDFF 545
N+V N L Q + + ++HFL++H+ F
Sbjct: 80 NRVCNALALLQCIASHPETRIHFLNAHITLF 110
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 207 GMMKQFVKALDKNNATFEYLCKKIPRLSD 293
G + F LDK N TF+ + + P LS+
Sbjct: 16 GNINNFSSFLDKENETFDVMMNEAPELSE 44
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = -3
Query: 594 DETFLPALYCNH-----QDYQEK-SPHVNLESGVLCSYYTPIFDTYPISLQPYFYSRDVY 433
+ETFLP L Q+ EK S HV+ ES + + ++D L P + Y
Sbjct: 418 NETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDY 477
Query: 432 Y 430
Y
Sbjct: 478 Y 478
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 384 DAWLAFRDVVNNFLGNNKHPDYKNK 458
D+W F D NN HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 417 NFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNL 557
+++ + KHP+YKN ++KY K G K+ D F +N+
Sbjct: 78 HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 448 IKIRLQTYWISI---KNWGVI*A*NSTF*IHMWTFFLIILVITV 570
I + LQ YW+S ++W + + ++ +H W FL++++ V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 144 TLQKNLISPEKILLPPLHIKLGMMKQFVKALDKN 245
T+ +N + K P LHI LG VKA + N
Sbjct: 715 TMNENSVWYGKTCNPQLHITLGTSSSDVKAFESN 748
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 369 NNTESDAWLAFRDVVNNFLGNN-KHPDYKNKVANLLDKYQKLGC 497
+N+ + L + VN LG+ H D+KN++ ++ +++L C
Sbjct: 662 SNSVTHRALLLKLCVNKLLGSLLDHNDFKNRLETAIETFRELPC 705
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 346 SAIKDLICGPSNTPLIFASDNLGIFLHRYSKVALFLSNALTNCF 215
+A DL C SN P + ASD L F+ + L N F
Sbjct: 225 TAYWDLQCMCSNPPKLLASDTLPKFIDAAGSAIQAFESILQNTF 268
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -2
Query: 406 SLNASQASDSV--LFIVASNSSSA-IKDLICGPSNTPLIFASDNLGIFLHRYSKVAL-FL 239
+L S A + V L V+S S+S +KD I GP + + A + +F + + L
Sbjct: 387 ALLTSSADNGVYELVNVSSRSNSLPLKDNIKGPGDDAIFVARNRFAVFSRSDQTIEIKDL 446
Query: 238 SNALTNCFIIP 206
SN +T +P
Sbjct: 447 SNKVTKTIQLP 457
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 348 EEFDATMNNTESDAWLAFRDVVNNFLGNNKHP 443
EE +++ ++E D L R V + L N+KHP
Sbjct: 1774 EELFSSLKSSEEDFALRTRCVTSLMLVNSKHP 1805
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 581 SLLFTVITKIIRKKVHM*I*KVEFYAHITPQFLI 480
SL+ I++I+++K + +V+FYA+ P+ ++
Sbjct: 695 SLVLPAISEIVKRKKDVHAERVQFYANPQPKAIV 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,047
Number of Sequences: 5004
Number of extensions: 55674
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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