Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i14
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   4.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    23   5.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    23   5.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    23   7.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    22   9.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    22   9.7  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 100 TQNITIALNTDGCHRRHP--RRYVSEFNI 20
           TQN+ +ALN  GC  +     R V+++NI
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDWNI 754


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 103 FTQNITIALNTDGCHRRHP 47
           F +N+T+A   DG   +HP
Sbjct: 152 FGENVTVAFVDDGIDFKHP 170


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  FGNISTRVSSMTTISVKCNSDV 94
           FG ++T  S +  +SV+C  DV
Sbjct: 795 FGKVNTNDSVIPNVSVQCPIDV 816


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 12  HEDMLNSETYRRGCRR*QPSVLSAI 86
           HE  L  ETYR  C   + +VL ++
Sbjct: 574 HETTLALETYRAACSNGRGAVLLSV 598


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 127 FFFYTYFLFTQ 95
           FFF T+FLF+Q
Sbjct: 188 FFFKTHFLFSQ 198


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 124 FFYTYFLFTQNITIALNTDGCHRRHPRRYVS 32
           F   Y L   NI+  ++TD  +   PRR +S
Sbjct: 491 FGVNYGLHLYNISRGIDTDIINNETPRRSIS 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,573
Number of Sequences: 5004
Number of extensions: 6632
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)