Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18i10
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 33 0.044
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 30 0.31
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 29 0.55
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 28 0.95
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.95
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.3
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 1.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 1.7
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 1.7
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.7
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 2.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.9
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 3.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 5.1
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 5.1
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 26 5.1
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.9
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 32.7 bits (71), Expect = 0.044
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Frame = +1
Query: 391 KMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETIL------LQKE--EREKDS 546
K G+ +KKM K+ ++LE LKG + + ET+L +KE ER++
Sbjct: 20 KTNGDFIKKMNTTDSKRLKLLEDLKGKLEVECKIRDGAETLLQVFDTNFKKETKERKEML 79
Query: 547 QKKTDEALESIQKSILALTTTV 612
+KK + LES +K I L +++
Sbjct: 80 KKKCTDELESSKKKIEELVSSI 101
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 29.9 bits (64), Expect = 0.31
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 REVTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQ-VKKMLMALDKKHRMLEPLK 465
+ V I+D+ D L +++ + R EDK F K+L ++ V + D + ML LK
Sbjct: 430 KNVDIDDVEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLK 488
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 433 DKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALE 573
+KK L+ +I ++ + +N+E+ LL +E+ + S+KK E E
Sbjct: 102 EKKINELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 451 LEPLKGMISRLDQRL-SNVETILLQKEEREKDSQKKTDEALESIQK 585
+EP +S LD+ + VE ++L++ ++ D QK+ D L++ K
Sbjct: 108 IEPENSKLSDLDEETRATVEKMMLEQSQKRTDEQKRKD-VLQNFMK 152
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 367 LERHEFREKMLGEQVKKMLMALDKKHRMLEPLK----GMISRLDQRLSNVETILLQKEER 534
+E E R +M +V+++ ++ E LK I +L+ +SN +++LQK++
Sbjct: 93 MENLEHRYEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDE 152
Query: 535 EKDSQKKTDEALESI 579
+ S ++ E E I
Sbjct: 153 LEKSIQRCSELEEKI 167
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 406 QVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEERE-----KDSQKKTDEAL 570
+V + + L +++ ++ L + + L QRLSNV + EE + +D+ D+A
Sbjct: 5 KVTRKDLLLSPENKEIDSLDDVSALLSQRLSNVFEFSIASEEVQSDEVFEDTYPNDDQAT 64
Query: 571 ESIQKSILALTTTVTE 618
++ + + T VTE
Sbjct: 65 FNLFSDVNTVVTKVTE 80
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 493 LSNVETILLQKEEREKDSQKKTDEALESIQKSILA 597
LSN T LL E D++ + EAL +IQ +I+A
Sbjct: 1008 LSNPSTSLLTDENTVDDNKVSSVEALSNIQSAIVA 1042
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +1
Query: 280 QTECR--EVTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQVKKMLMALDKKHRML 453
Q EC+ T+E ++DVL ++ ED++ R + + ++ + + L K H L
Sbjct: 1659 QKECKIKSNTVESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQL 1718
Query: 454 EPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESI--QKSILALTTTVTE 618
E R +Q+ L + ++++ KK + E + + SIL + + +
Sbjct: 1719 EEQHETFFRAEQQRMTQLGFLKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRD 1775
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 430 LDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEAL 570
+DK+H + E L + LD++L ++ +L E+ ++ ++ + L
Sbjct: 13 IDKEHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHGL 59
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/85 (23%), Positives = 44/85 (51%)
Frame = +1
Query: 367 LERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDS 546
LE + R + + E+ ++ + DK HR+L +G + +++L ++ + +KE+ +K S
Sbjct: 126 LEAKKRRIESMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQL--LKKSIRRKEKEKKKS 183
Query: 547 QKKTDEALESIQKSILALTTTVTEN 621
E ++ +K++L EN
Sbjct: 184 SDAWKERKDNEKKAMLMRQQRREEN 208
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -3
Query: 355 LLVPNELRSSAHPGYPRL*LPGILFEESTIEARRRPTIV*FRSACRPFNSKL 200
+L P E+ S P+ P IL + S A P I S +PFNSKL
Sbjct: 522 VLQPLEVNRSISIPPPKSISPSILHKPSLESASSTPKISSCSSTPKPFNSKL 573
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 493 LSNVETILLQKEEREKDSQKKTDEALESIQKSILALTTTVTE 618
++ +E ILL+ E+ + E ES QK +L LT +TE
Sbjct: 19 ITQIEKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITE 60
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/82 (18%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 346 VRATEDKLERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRL-SNVETILLQ 522
+ A + +++ K++ ++ K + +KK+ M+E + I+ + + L S + +I ++
Sbjct: 358 LEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQKIAGMREELESQISSITME 417
Query: 523 KEEREKDSQKKTDEALESIQKS 588
E+ + + E L +++ S
Sbjct: 418 FEKLKSHVELYIAELLRNLRSS 439
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 2.9
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +1
Query: 373 RHEFREKMLGEQVKKML-MALDKKHRMLEPLKGMIS-----RLDQRLSNVETIL-LQKEE 531
R F EK ++KML + + HR + + D + SN E ++ + KEE
Sbjct: 5 RKRFNEKGRQSGIQKMLNLKRARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEE 64
Query: 532 REKDSQKKTDEALESIQKSI 591
R+K Q+ D+ L+ + SI
Sbjct: 65 RQKRKQELKDQLLKENEGSI 84
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 274 TPQTECREVTIEDIRDVLMTLVHLVRATEDKLERH 378
TP T C+++ + + VL +VHL + LE+H
Sbjct: 247 TPMTYCKDLGLLGPKTVLAHMVHLDTQDLEILEKH 281
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 412 KKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESIQKSI 591
K++ A+ LK I +L + L++ ET++ + + D Q + LES +++
Sbjct: 356 KRLQSAIQPLQEENNSLKQQIEQLQRELAS-ETVVKENLKSSLDQQSANVQKLESTNRAL 414
Query: 592 LALTTTVTEN 621
+ T+ E+
Sbjct: 415 ESTIKTLEED 424
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 346 VRATEDKLE--RHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILL 519
VR ++D E RH F E + + + ++ M L K H L PLK + L ++++ V+ LL
Sbjct: 179 VRKSQDDEENFRHSFDEAL--KTIPELKMHLSKAHDDLNPLK--VLNLFKQITPVDCELL 234
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 487 QRLSNVETILLQKEEREKDSQKKTDEALESI 579
+RL+ E +L +K+ERE+ Q++ + E +
Sbjct: 884 RRLAEEEALLKEKQERERQLQEERQKMQEEV 914
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 370 ERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQ 549
E + E++L + +K +A ++L + I L+ +L ++ LLQ EERE S+
Sbjct: 72 ESSQHAEEILSREKEKFRIA-----KLLNITENEIMSLESQLQKMKEQLLQLEERENTSE 126
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +3
Query: 237 QTMVGRRRASIVDSSNRMPGSYNRGYPGCADDLSSFGTSNRRQTGET*VQREDAWGTSEE 416
QT + I D ++ +PG+++ P C S +N +++ + + SE
Sbjct: 274 QTAAAPNESQIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEP 333
Query: 417 DADG 428
+ DG
Sbjct: 334 EDDG 337
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 298 VTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQVKKMLMALDKKHRMLE 456
++ ++I+ L+ + HL++ HE EK+ +L+ L ++HR+ E
Sbjct: 285 LSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESFGASSLLIELSQEHRLDE 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,622
Number of Sequences: 5004
Number of extensions: 44880
Number of successful extensions: 168
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -