Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i06
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0310 + 20734767-20734936,20735160-20735288,20735748-207358...    28   4.1  
05_07_0006 - 27001038-27001600,27001713-27001980                       27   7.2  

>01_05_0310 +
           20734767-20734936,20735160-20735288,20735748-20735850,
           20736017-20736119,20737394-20737496,20737620-20737674,
           20737768-20737800,20737936-20737982,20738221-20738347
          Length = 289

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 354 LSRAFLTVDARTSTIARRGRREEDSGA 434
           + RAF TVDA  ST   +  +E++SGA
Sbjct: 86  IQRAFATVDANLSTWLEQMDKEDESGA 112


>05_07_0006 - 27001038-27001600,27001713-27001980
          Length = 276

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 47  RDVPNS*HWRIHWPLFVNAC 106
           RD+P     R++WPLF+N C
Sbjct: 221 RDMPLPLPARVNWPLFLNRC 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,260
Number of Sequences: 37544
Number of extensions: 157491
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)