Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i04
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   0.94 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   0.94 
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   2.9  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    24   6.7  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   8.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   8.8  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   8.8  

>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = -3

Query: 316  NFLILILLSFRKYGTISPINCIK--IRGTLLTLLMTISTRLFMLS---YIDSMTIVSLYS 152
            NFL    L++++Y   S I+ +   I    L LL     R+ +L    YID+   V L  
Sbjct: 984  NFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERTVLLKG 1043

Query: 151  MDACDVASVQQ--LNAFMSKFCASSFGNVASFFLLESFPFED 32
              AC++ S  +  L   + +   + F    +  LL +F F++
Sbjct: 1044 RVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDE 1085


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 337 LCKRLFCNFLILILLSFRKYGTISPI--NCIKIRGTLLTLLMTISTRLF-MLSYIDSMTI 167
           LC +LFC    ++   + K+  +SPI  +   I  +  T L    TR+  ML+  D+  +
Sbjct: 456 LCPKLFCFRDDIVADDYTKFSLLSPIRSDMSGISASPNTNLKEHRTRILQMLATPDAKQL 515

Query: 166 VSLYSMDA 143
            SL S DA
Sbjct: 516 SSLTSSDA 523


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
 Frame = +3

Query: 27  YKSSKGNDSKRKNDATLPKEDAQN----LDMNALSCCTDATSQASIEYKDTIVIES---- 182
           YK  K  D+K +    L  +D Q     L+ N      D T Q  +   D+ + ++    
Sbjct: 162 YKVGKAKDAKYQ---LLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ 218

Query: 183 IYDNMNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLN 296
           +Y +    V I +N    +PR   +  GLMV    KL+
Sbjct: 219 VYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 256


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  KSSKGNDSKRKNDATLPKEDAQNLD 104
           KSSK   ++R+     PK+ A+ LD
Sbjct: 162 KSSKRKTTRRRRTPNRPKKSAEELD 186


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 171 VIESIYDNMNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLNRINIRKLQNKRL 332
           ++E I DN  NL  + I     V    M  I    PY  +L   N RKL +  L
Sbjct: 137 ILEYISDNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCRKLTDVSL 190


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 151 MDACDVASVQQLNAFMSKFCASSFGNVAS 65
           MD C V  +       SKFC S FG V++
Sbjct: 209 MDGCQVVPISS-----SKFCCSRFGLVST 232


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 129 DATSQASIEYKDT--IVIESIYDNMNNLVEIVINKVSNVPRILMQLI 263
           +A  QAS+E +    I +E+ + N+N L +     V N  R + QL+
Sbjct: 138 EALYQASLEGQSDLPITLENSFSNLNTLSDNFDRLVLNFCRNIFQLV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,478
Number of Sequences: 5004
Number of extensions: 24856
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)