Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i04
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0294 - 15968656-15969074,15970832-15970931                       27   6.2  
03_05_0800 - 27815322-27815838,27817549-27817805                       27   6.2  
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374...    26   8.2  

>11_04_0294 - 15968656-15969074,15970832-15970931
          Length = 172

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 66  DATLPKEDAQNLDMNALSCCTDATSQASI 152
           D T+P+  A NLD +  S C  A   AS+
Sbjct: 67  DPTIPQSLAMNLDASDRSACPTAVDGASV 95


>03_05_0800 - 27815322-27815838,27817549-27817805
          Length = 257

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 165 TIVIESIYDNMNNLVEIVINKVSNVPRILMQLIGLM 272
           T + E  Y + + + E   N VSNVP +L+ L+GL+
Sbjct: 17  TELCEENYAHSSYIAEFY-NTVSNVPCVLLALVGLV 51


>08_02_1553 +
           27835320-27835364,27836853-27836966,27837062-27837457,
           27837751-27837822,27837957-27838082,27838164-27838244,
           27838364-27838558,27839018-27840013
          Length = 674

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 33  SSKGNDSKRKNDATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDNMNNLVE 212
           SS GN S R + +   KE  +       SC     SQ   E   + V+ S    ++ L  
Sbjct: 423 SSSGNGSVRSSVSAAAKEQRRRASSLPSSCAQSVASQDEYEQSGSSVMSSPV-RLHKLAP 481

Query: 213 IVINKVSNVP 242
             +    NVP
Sbjct: 482 PPLPAAHNVP 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,886
Number of Sequences: 37544
Number of extensions: 121857
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)