Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i04
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   8.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   8.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 12  QNDYFYKSSKGNDSKRKNDATLPKEDAQN 98
           QND     ++ ND+KR  +     ++ QN
Sbjct: 500 QNDNKQNGNRQNDNKRNGNRQNDNQNNQN 528


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 12  QNDYFYKSSKGNDSKRKNDATLPKEDAQNLDMN 110
           QND    ++  ND+ +KN+    K++A N   N
Sbjct: 419 QNDNIQNTNNQNDNNQKNN----KKNANNQKNN 447


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 15  NDYFYKSSKGNDSKRKND 68
           ND  + SSK N+    ND
Sbjct: 447 NDQAHHSSKSNNRHNNND 464


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -2

Query: 113 CIHVQILCIFFW 78
           CIH  +  + FW
Sbjct: 38  CIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -2

Query: 113 CIHVQILCIFFW 78
           CIH  +  + FW
Sbjct: 486 CIHPTVFSVLFW 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,288
Number of Sequences: 438
Number of extensions: 1558
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)