Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h23
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 116 2e-27
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 114 4e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 1.2
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 24 6.5
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 24 6.5
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 6.5
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 8.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 24 8.6
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 8.6
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 116 bits (278), Expect = 2e-27
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +2
Query: 38 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQXGYPAAKLRSYHWSVKAXXXXXXX 217
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA GYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 218 XXXMRHLKIVRRRFRNGFKEGKPT 289
M +LK V R F+NGF+ GKPT
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 114 bits (275), Expect = 4e-27
Identities = 52/91 (57%), Positives = 60/91 (65%)
Frame = +2
Query: 38 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQXGYPAAKLRSYHWSVKAXXXXXXX 217
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA GYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 218 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 310
M +LK V R F+NGF+ GKP A A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 246 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 133
T+F + +PV+ + FT+ W N A +P A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 111 DLPHLLHNVWVLFRRLPKLEVPF-VILSLLTIRKK 10
++P L H++W++ + KL + F ILS + I K
Sbjct: 710 EIPSLFHSIWIMTGKGLKLWLSFSEILSSVLINTK 744
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 346 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 251
IFIYL+ + Y +L R F +KT IT+ P
Sbjct: 17 IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 345 FLFT*HILIHDEATAFLGGVGFPSLKPLRKRLLTIFK 235
+LF+ HI+ H+E + G + + ++LL FK
Sbjct: 591 YLFSLHIIFHNELESLCGITQSSFIPTIMRQLLDWFK 627
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -1
Query: 137 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 36
+LI+ CD +++ CI + S + + S++ S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 144 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 37
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 118 SHSKIKMRPMXISCSKITILP 180
SHS MRP+ I + +T+ P
Sbjct: 697 SHSTFTMRPLSIERTTLTVTP 717
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 44 KGTSSFGKRRNKTHTLCRRCGRSS 115
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,340
Number of Sequences: 5004
Number of extensions: 25800
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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