Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h22
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 0.32
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 24 3.0
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 24 4.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 23 7.0
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 23 7.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 23 7.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 7.0
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 23 9.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 23 9.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 23 9.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 0.32
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 5 PSRAATRAPXPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 157
PS P P + P PP + P P S+G P A P P A
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 25.8 bits (54), Expect = 0.99
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 5 PSRAATRAPXPGSHAPE-RCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 157
P A P P + P P K P PA S A PR + P+P++ A
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNA 1263
Score = 23.4 bits (48), Expect = 5.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 5 PSRAATRAPXPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAP 145
PS AA P P P P P P S+ A P A P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 3.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 116 FAPRRAGPAPNAYALKLGSGSPAYTMGARVGFQAKAKSPGPAVYFQR 256
FA +R GP P+ LK+ + GA+ GF P F R
Sbjct: 356 FAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNR 402
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 23.8 bits (49), Expect = 4.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 115 AESSAHGVGRSAGVLHRGAALGSV 44
AE+ H +GRS HRG A+ +
Sbjct: 362 AETYLHRIGRSGRFGHRGLAISFI 385
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 23.0 bits (47), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 210 SKLKPSLRDLRSTSRGTL 263
+K+ P+L DL STS G++
Sbjct: 95 AKINPALFDLSSTSSGSI 112
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 23.0 bits (47), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 72 FIGGQRSGACEPGXGARVAARDGN 1
F+ G + CEP R+ RD N
Sbjct: 581 FVKGAQVAYCEPSPVLRLRTRDSN 604
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.0 bits (47), Expect = 7.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 65 PMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSP 181
P P+ P YS R+ P P+A LG GSP
Sbjct: 429 PQVSPKRPTYS----------RSSPLPSASVPALGDGSP 457
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.0 bits (47), Expect = 7.0
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 38 GSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGARVGFQA 217
GS P P+ P+ +GAR GF + +PN+ + + S F +
Sbjct: 366 GSQEPSFSLPLA-PKWFKVPVGARFGFPNKIVSFSPNSKEVTITSAPDEVEQDEAKSFHS 424
Query: 218 KAK 226
AK
Sbjct: 425 SAK 427
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 22.6 bits (46), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 171 LARRLIPWALGSGSKL 218
LA ++PWA+GS + L
Sbjct: 293 LAWLIVPWAMGSAAAL 308
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 134 GPAPNAYALKLGSG 175
G APN Y L LG G
Sbjct: 1389 GKAPNTYNLMLGGG 1402
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 22.6 bits (46), Expect = 9.2
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 29 PXPGSHAPERCPPMKDPRAPAYSMGARLGFAPR-RAGPAP 145
P P PP P PA S G +AP +A P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,446
Number of Sequences: 5004
Number of extensions: 13894
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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