Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h17
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 29 0.68
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 0.90
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.7
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 27 2.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 3.6
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 3.6
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 26 3.6
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 4.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.3
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 25 6.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.3
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 25 8.4
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 25 8.4
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 8.4
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 28.7 bits (61), Expect = 0.68
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Frame = +3
Query: 117 ETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAY 296
E D I + N N K++ L SL EL AL D Y + L + ++
Sbjct: 854 EYFDTIASNL-NSPNADVMKAAAIALGSLTSQSEKFIKELCALYVS--DAYDKELLLISF 910
Query: 297 LSLLSAKTMPCSLVEKK-NILQVAFDKLKPYA------IREECLFILLKVQNLLCYYLIQ 455
L+ L + +K +IL + +K ++ + ECL +L+ ++ YY ++
Sbjct: 911 LTFLKKSKIDYETADKIWDILSKDIENIKDFSTSPFRTLLSECLGLLICNESSSLYYKLE 970
Query: 456 LDQFTQASN 482
L ++ASN
Sbjct: 971 LLSSSEASN 979
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.3 bits (60), Expect = 0.90
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +3
Query: 102 FKSVMETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSL 281
F V ETL + + + N + ++++ LKK+ ME GKE ++ V +L
Sbjct: 93 FFRVYETLGEVPDPYPLLIEAANNLKTQKQIEDLKKEKEE--MEGSLQGKEKLEREVENL 150
Query: 282 --AMDAYLSLLSAKTMPCSLVEKKNILQVAFDKLKPYAIREE 401
+D Y L+ + + + K+ + ++ K Y E+
Sbjct: 151 RKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQ 192
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKKNILQ 359
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKKNILQ 359
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 285 MDAYLSLLSAKTMPCSLVEKKNILQVAFDKLKPYAIREE 401
++ +SLL +K PC V ++ ++Q+ K + +EE
Sbjct: 202 VERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLDKEE 240
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKKNILQ 359
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKKNILQ 359
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 402 ILLGLRMVLICRTQLEGYSFFLRESKA*FWRKEEI 298
+L G+RMV IC T L Y LR ++ + K++I
Sbjct: 627 LLSGMRMVQICPTSLRVYDSNLRLTQLFNFSKKQI 661
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 423 VQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTES 575
++ L+ Y + + N+L +E ++EK QTD+ E++ E+
Sbjct: 95 LETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQTDQVSARENILQRET 145
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 335 RRKKEYPSSCVRQIKTIRNPRRMSIYFIESSKSAL 439
RR +E+ ++ I+ IRN I+ +ES SAL
Sbjct: 391 RRHEEHSQKLLKFIEEIRNDYEERIHALESQNSAL 425
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 408 FILLKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESI 578
+I K +L+C YL+ ++ A I ++ +Y + ++ ++ L A DL TE I
Sbjct: 363 YIERKTTSLVCLYLLGVESLAPALRIPTALPPVYSRHQRHHSE-ILGAMDL--TEKI 416
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 348 NILQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKS 527
+ILQ+ + + + EC +LL+++N+L L+Q + S+ L S + Y
Sbjct: 1988 DILQLLKENKQMSSQLHECFQLLLEIRNVL-LSLLQSHKQLDLSDDLASFRKYYILELLK 2046
Query: 528 QTDKFLDAEDLFTTESIA 581
++ FL ++L S+A
Sbjct: 2047 ISESFLIVDNLQNAFSVA 2064
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 105 KSVMETLDRITTTFENVRNVIKNKSSMERLQSLKKDMH 218
K ++ RI + N +++ KNK +E+L ++KK+++
Sbjct: 24 KRTIDGAYRIYVSVSNNKDLKKNKEILEQLLTVKKELN 61
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 126 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 287
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 288 DAYLSLLSAKTMPCSLVEKK 347
+ Y L +T K+
Sbjct: 184 EIYDFLEDKRTASYGKTHKR 203
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 144 FENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKEN 257
F++ N+I + S ER+ S+ +DM T+ + + L EN
Sbjct: 28 FDHTTNLILS-DSFERIISMDQDMETIPLGVYLLRGEN 64
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 IRYGNIRSNNNYVRKCEERNQE*EFNGTPS-KSQER 211
+R+GNI++ + ++C +R G P+ KS+E+
Sbjct: 127 LRFGNIKTFRKHHQECVKRRATISVQGNPNCKSKEQ 162
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 266 VREVSCNGRLFISSFRQNYALLSRRKKEYPSSCVR 370
+ +V+C +LF+ S ++ + KKE PS R
Sbjct: 1117 INDVNC-AKLFVESLKEKLPSVLSEKKEMPSEVKR 1150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,947
Number of Sequences: 5004
Number of extensions: 46809
Number of successful extensions: 129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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