Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h15
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 138 2e-34
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 85 4e-18
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 78 5e-16
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 76 2e-15
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 73 2e-14
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 71 9e-14
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 57 9e-10
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 3.5
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 24 8.0
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 24 8.0
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 24 8.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 138 bits (335), Expect = 2e-34
Identities = 64/107 (59%), Positives = 81/107 (75%)
Frame = +2
Query: 89 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 268
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D +V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 269 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHIL 409
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVL 112
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 85.0 bits (201), Expect = 4e-18
Identities = 37/97 (38%), Positives = 64/97 (65%)
Frame = +2
Query: 92 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 271
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 272 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKY 382
LF + IGC ++G+ AD+R+ ++ AR + N ++ Y
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTY 103
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 78.2 bits (184), Expect = 5e-16
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PV 259
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 260 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIP 397
S L+ + D + C + G+ AD+ + AR + + E+P
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMP 106
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 75.8 bits (178), Expect = 2e-15
Identities = 39/103 (37%), Positives = 59/103 (57%)
Frame = +2
Query: 89 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 268
G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL P
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNN 64
Query: 269 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIP 397
+ ++ IG TG I D + V+RAR EA +W+ YGS IP
Sbjct: 65 RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIP 107
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 72.5 bits (170), Expect = 2e-14
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +2
Query: 86 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRK-VPDRLLDPVS 262
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK VP L VS
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPK--LQNVS 58
Query: 263 VTHLFALTDRIGCV-MTGMIADSRSQVQRARYEAANWQYKYGSEIPVHIL 409
A+ D C+ G+ AD+R + +AR EA N + + + L
Sbjct: 59 NFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYL 108
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 70.5 bits (165), Expect = 9e-14
Identities = 39/98 (39%), Positives = 56/98 (57%)
Frame = +2
Query: 104 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 283
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L S+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 284 TDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIP 397
T IG V +GM D R V ++R A K +E P
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYP 105
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 57.2 bits (132), Expect = 9e-10
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = +2
Query: 92 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 271
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + L
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEE--LSSYQ-KK 62
Query: 272 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHIL 409
L + D IG + G+ D+R + EA + + + IPV L
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRL 108
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 365 WQPRSELVVLETGYQQSSR 309
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/82 (17%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 152 LKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVS-VTHLFALTDRIGCVMTGMIADS 328
+ + G + VA+ G + +A+ ++ + + + +FA+ D+ +TG+ D
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 329 RSQVQRARYEAANWQYKYGSEI 394
++ + RY+ ++++ +I
Sbjct: 61 QTLYELFRYKVNLYKFREERQI 82
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 176 LTSVALRGTDAAVVAAQRKVPDRL--LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRA 349
+ S++ ++ + + RL +DP+ H ALT V++G + + +
Sbjct: 149 IVSISWSADSRFFISTSKDLTARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTV 208
Query: 350 RYEAANWQYKY 382
+ A + +KY
Sbjct: 209 SKDGALFVWKY 219
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 263 VTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQ 373
+ H +RI C M M+ADS S+ + EAA Q
Sbjct: 272 IEHNIPEGNRITC-MVAMLADSNSEPKNVEDEAAKRQ 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,126
Number of Sequences: 5004
Number of extensions: 25485
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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