Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h15
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 365 NWQYKYGSEIPVHIL 409
           NW Y++   IP HI+
Sbjct: 628 NWVYEWKELIPSHIM 642


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 220 CHYSCICTA*CHRC 179
           C Y   C A CH C
Sbjct: 737 CRYEAHCFALCHCC 750


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 349  SSLYLRPAISNHPGHD 302
            SSL+ RP+  N+P  D
Sbjct: 1903 SSLWSRPSTQNNPSSD 1918


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 349  SSLYLRPAISNHPGHD 302
            SSL+ RP+  N+P  D
Sbjct: 1899 SSLWSRPSTQNNPSSD 1914


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 398 QVSQTHTCTASWQPRSELVVLET 330
           Q S THT   +W+ +  + +L +
Sbjct: 495 QWSSTHTLDVAWRRKVTIEILNS 517


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 398 QVSQTHTCTASWQPRSELVVLET 330
           Q S THT   +W+ +  + +L +
Sbjct: 533 QWSSTHTLDVAWRRKVTIEILNS 555


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 112 DSNMSVESGTAFSSHSIYSISKIRLKFTKFYNATLT 5
           DS   ++S   +   + YS++ +RL  + F++  +T
Sbjct: 280 DSICGIDSKPDYRELTEYSVTSVRLISSGFFDNFVT 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,606
Number of Sequences: 438
Number of extensions: 1566
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)