Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h11
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   4.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 175 TSIGFLFMWRHFIINNSSNETQFTEMFS 92
           T++GFL  W++     + NE  F+ + +
Sbjct: 7   TALGFLLFWQNSASLENDNEFGFSYLLN 34


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 274 CRRSASCIFEKRPK 315
           CR   SCI +KR +
Sbjct: 146 CREEKSCIIDKRQR 159


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 274 CRRSASCIFEKRPK 315
           CR   SCI +KR +
Sbjct: 146 CREEKSCIIDKRQR 159


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 191 IPNFVTRMLATIAYWLPPAII 253
           IP+ +  +++ IA+W+ P  I
Sbjct: 222 IPSALIVVMSWIAFWIKPEAI 242


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 20  SKERQSETNQRESSFEFN*RKFR 88
           S++R S + +RE     N RK+R
Sbjct: 35  SRKRYSRSREREQKSYKNERKYR 57


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 20  SKERQSETNQRESSFEFN*RKFR 88
           S++R S + +RE     N RK+R
Sbjct: 35  SRKRYSRSREREQKSYKNERKYR 57


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 272 YVEEAHHASLRK 307
           Y+ E H ASLRK
Sbjct: 300 YLNEVHTASLRK 311


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 272 YVEEAHHASLRK 307
           Y+ E H ASLRK
Sbjct: 338 YLNEVHTASLRK 349


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 20  SKERQSETNQRESSFEFN*RKFR 88
           S+ER S + +RE     N R++R
Sbjct: 268 SRERYSRSREREQKSYKNEREYR 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,279
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)