Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h09
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 31 0.14
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 1.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.7
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 26 3.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 4.0
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 5.3
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 7.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 9.2
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 9.2
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 195 TSSHLLFNRFISVQHPKQNYIRL*K--FTVSIHYIFFAHDIVAVPTKR 332
TSS LL + +S+ P+Q ++ K T S Y+ H++VA +KR
Sbjct: 302 TSSPLLDQKLLSINKPQQEKLKFPKLLLTNSSDYVRIFHELVAFSSKR 349
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 313 LLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMVRARKVQDVEA 444
LL +SDLY+ G V+ R GG L+ +KV D A
Sbjct: 399 LLLVKSDLYSINHGQVEMNPRRFGGTAPLVKLGAHFKKVADFSA 442
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 205 ISFLTDSSPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLY 339
I + S P I + + DC + TF+ ++ L +SD+Y
Sbjct: 518 IDAIEKSEPIGIFSCLDEDCVMPMATDATFTEKLHLLFKGKSDIY 562
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 26.2 bits (55), Expect = 3.0
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +1
Query: 139 KGRYSSLYSARRVSLPKEEPHRISFLTDS--SPYNILNRITSDCESS-PSASITFSSRMI 309
+ +Y SL+ A+++S H+ F++ S + + +TS ++S PS S + SS
Sbjct: 216 QNKYESLH-AKQISASDLSLHQ-EFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESS 273
Query: 310 SLLSQQSDLYNSIRGSVQNQSRDLGGQET 396
S +S SDL ++ S ++S D Q +
Sbjct: 274 SSVSDSSDLSSTSDSSSGDESSDTARQSS 302
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 208 SFLTDSSPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNSIRG 354
S L S+P + ITS S+ ++++S ++S +S S L +S G
Sbjct: 3472 SVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGG 3520
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 226 SPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNS 345
+P +I +R + C S+PS+++T S+ S QS+ YN+
Sbjct: 301 NPLSISSRPSPCCPSTPSSAVTLSNGFDS----QSNAYNN 336
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 180 TSERRTSSHLLFNRFISVQHPK 245
TS + + +LFN F S+Q PK
Sbjct: 191 TSNAKITDTMLFNHFSSIQKPK 212
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 5.3
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Frame = +1
Query: 109 ETSWRKDGDWKGRYSSLYSARRVSLPKEEPHRISFLTDSSPYNILNRITSDCESSPSAS- 285
E S R+ G S+ Y R L K + S PY + D + +A
Sbjct: 22 ERSQRRSQSPPGEQSA-YHRERSPLRKRGNYYDDRTRASGPYPTFTKPLIDPYTQTNAVS 80
Query: 286 ----ITFSSRMISLLSQQSDLYNSIRGSVQNQSRDL 381
I + S+ + + DLYNS+ G+ N +DL
Sbjct: 81 YERFIRWYSKENHISATTEDLYNSLHGTYNNYKQDL 116
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 235 NILNRITSDCESSPSASITFSSRMISLLSQ 324
N+LN+ S + +PS S F+ R L+S+
Sbjct: 74 NLLNKFMSAQDGTPSKSTGFNERSSQLVSE 103
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 85 YENLMQKVETSWRKDGDWKGRY 150
YEN + ++E WR+D D Y
Sbjct: 519 YENKLMRMEQQWREDVDQLQEY 540
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 7.0
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 232 YNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNSIRGSVQNQSRDLGGQETLL 402
YN LNR+ S+ + + S S+ F S ++ L ++ L +V N + ++ G LL
Sbjct: 1311 YNTLNRLLSEEKENLSLSVGFVSGLLQLCHRK--LSQLFEKAVINPTIEVYGDIVLL 1365
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 155 AFTLQGVFHFRKKNLIAS 208
A++L FHF+K+ LIAS
Sbjct: 432 AYSLSSKFHFKKEILIAS 449
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 163 SARRVSLPKEEPHRISFLTDSSPYNILNRIT 255
S + S+P+ PH I L DS+ ++ R++
Sbjct: 63 SYKCTSVPETAPHEIYRLVDSNSLQLVGRVS 93
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 235 NILNRITSDCESSPSASITFSSRMISLLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMV 414
N +N ++ S SAS+T S +I + YN VQ +RDL +
Sbjct: 15 NAVNHFSTAMMSGASASLTEGSAIIPFSNPNEVFYN----PVQQFNRDLSVTAIRAWSET 70
Query: 415 RARKV 429
R++K+
Sbjct: 71 RSKKI 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,838
Number of Sequences: 5004
Number of extensions: 34905
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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