Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h09
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-5|CAL49438.1|  326|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical ...    27   6.3  
U23455-6|AAC46536.2|  518|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z68316-5|CAL49438.1|  326|Caenorhabditis elegans Hypothetical
           protein K08E4.7 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 352 LGCCCTSRFVGTATISCAKKM*WMLTVNFHSLM*FCL 242
           L CCC    +   +++ AKK+ W      + LM  CL
Sbjct: 248 LMCCCEKILIKADSVNLAKKLIWAERFALNELMDHCL 284


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 331 DLYNSIRGSVQNQSRDLGGQETLLLNMVRARKVQ 432
           DL N+I  + Q   + LGG ET+LL +++   +Q
Sbjct: 555 DLGNNIFYADQVYQKSLGGSETMLLGLIKTAGMQ 588


>AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical
           protein Y50E8A.16 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 145 RYSSLYSAR--RVSLPKEEPHR-ISFLTDSSPYNILNRITSDCES 270
           +Y+   +AR  RVSL +   H+ ISF  D+    +++RIT D ES
Sbjct: 296 QYAERLTARNIRVSLFRAILHQDISFFDDNKTGQLMSRITKDSES 340


>U23455-6|AAC46536.2|  518|Caenorhabditis elegans Hypothetical
           protein F55E10.7 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 207 LLFNRFISVQHPKQNYIRL*KFTVSIHYIFFAHDIV-AVP-TKRLVQQHPRKRTE 365
           L  +R+I+V HP   ++R  KF++ +  + F+  ++  +P TK+   Q  +  T+
Sbjct: 143 LSVDRYIAVCHPTLYWLRTTKFSLGVLAVCFSVSLIFIIPVTKKATMQVMKDNTD 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,994
Number of Sequences: 27780
Number of extensions: 204120
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)