Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h09
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    26   0.27 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    26   0.27 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    26   0.27 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    26   0.27 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    26   0.27 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNINY + I V
Sbjct: 97  NNYKQLCYNINYIEQIPV 114


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNINY + I V
Sbjct: 97  NNYKQLCYNINYIEQIPV 114


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNINY + I V
Sbjct: 97  NNYKQLCYNINYIEQIPV 114


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNINY + I V
Sbjct: 97  NNYKQLCYNINYIEQIPV 114


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNINY + I V
Sbjct: 97  NNYKQLCYNINYIEQIPV 114


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 83  NTFYQKCYNINYYDIISV 30
           N + Q CYNIN+ + I V
Sbjct: 97  NNYKQLCYNINHIEQIPV 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 320  PNKATCTTASEEAYRIS 370
            P+  TCTT + +  RIS
Sbjct: 1085 PHDTTCTTLTSQTIRIS 1101


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 278 DGELSQSDVILFRML 234
           DG+LS+  VILF +L
Sbjct: 154 DGKLSRGQVILFIVL 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,423
Number of Sequences: 438
Number of extensions: 2650
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)