Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h07
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   0.52 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    28   1.2  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.7  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.4  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   8.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.4  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -2

Query: 382 SDDAAIVLP--SLGYRAAFSLATKLMTVSDIHNIRHNDVSEIINPCTFSARWRNRRYSGP 209
           +  A IV P  SLG R+   + + L + +   N+R    + I+ P   S+    R  S  
Sbjct: 349 NSSAKIVRPGTSLGVRSPSRIQSTLSSRTTTGNVR-TKAANIVRP---SSSINRRPPSSI 404

Query: 208 NQRREIPIKVNRPELPRAKTQRRPARSCQGNAGH 107
           NQR    +++  P   RA    RP+ S      H
Sbjct: 405 NQRPPSNLRILAPSRSRATIHERPSSSILHRHAH 438


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 484 LAQRRRSSRRLIGKCDGVYAPPWLGSVVAR 395
           L Q ++S  R I KC G+Y  P L SV  R
Sbjct: 101 LQQIQKSGERSIPKCIGMYTSPHLRSVCER 130


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -1

Query: 245 LRQVAQSTL*WTKSKEGNSN*SQPTRTSSSENPKTT-SQKLSRKCWPSSER*GRDAT*TG 69
           L   AQSTL    S    +   +  RTS + +P+++ S  +SR   P+S R G       
Sbjct: 130 LSTTAQSTLQVPSSAASGA---RTQRTSITNDPQSSQSSSVSRN--PASSRAGSPTRDNA 184

Query: 68  PASWPARRSTATTASRND 15
           PA+ PA     T +S  D
Sbjct: 185 PAASPASSEPRTFSSFED 202


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 212 TKSKEGNSN*SQPTRTSSSENPKTTSQKLSRKCWPSSER*GRDAT*TGPASWPARRSTAT 33
           + S   +S  S  T +SSS  P TTS   S     SS    + ++ +  +S  +R S+ T
Sbjct: 120 SSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSS-SKSSSSSSKSS--SRSSSRT 176

Query: 32  TASRNDS 12
           T+ R  S
Sbjct: 177 TSHRTTS 183


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 343 RAAFSLATKLMTVSDIHNIRHNDV 272
           R A+++   L T+ + HNI H DV
Sbjct: 419 RTAYAVVQGLKTLKEEHNIIHRDV 442


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 173 SVDFNWNFPPLIWSTIASIAPPG 241
           +  + W+   L+W  + SI PPG
Sbjct: 162 AAQYVWSLNKLLWPILMSIYPPG 184


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 241 ARWRNRRYSGPNQRREIPIKVNRPELPRAKTQRRPARSCQGNAGHPRNAEEETQRE 74
           A  + +R +  N +RE   K  R    +AK +       +      R AEE+ +RE
Sbjct: 589 AEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKRE 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,320
Number of Sequences: 5004
Number of extensions: 47450
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)