Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h07
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0772 + 21035762-21037567 32 0.30
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 31 0.92
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 2.8
02_01_0388 + 2812235-2815003 29 2.8
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 29 3.7
05_07_0176 - 28168595-28169806 28 4.9
11_05_0026 - 18462749-18462841,18463642-18463726,18463989-184640... 28 6.5
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 27 8.6
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 27 8.6
>08_02_0772 + 21035762-21037567
Length = 601
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 432 TPSHLPISLLEERRLCAKNCHSF--LFANVKKRLLNCSKKTNVIGVLHFYLSSN 587
TP H PI L + R+C +CH+F +F+ V RL+ +T F S N
Sbjct: 546 TPQHRPIRLAKNLRVCV-DCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCN 598
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 215 WTKSKEGNSN*SQPTRTSSSENPKTTSQK 129
W + K+ S+ + PT++ +S++PK+ SQK
Sbjct: 419 WGRGKDDGSSLASPTQSFTSDSPKSASQK 447
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 215 WTKSKEGNSN*SQPTRTSSSENPKTTSQK 129
W + K+ S + PT+ +S++PK+ SQK
Sbjct: 724 WGRGKDDESRLASPTQFFTSDSPKSASQK 752
>02_01_0388 + 2812235-2815003
Length = 922
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 432 TPSHLPISLLEERRLCAKNCHSFL--FANVKKRLLN 533
TP +PI +L+ R+C +CH+F+ ++V KR ++
Sbjct: 867 TPKGMPIQILKNLRICG-DCHTFIKFVSHVTKRQID 901
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 205 DLVHYSVDCATWRRRYMD*LFLKHHCV 285
DL ++V C W RR+ D FL+ C+
Sbjct: 21 DLFKFAVTCRRWLRRFTDPAFLRGLCL 47
>05_07_0176 - 28168595-28169806
Length = 403
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 28 AVVAVLLRAGHEAGPVHVASLPQRSEDGQH 117
+V +L GH VH A LPQ+ D +H
Sbjct: 70 SVCCLLCSGGHGISVVHAAHLPQQPVDARH 99
>11_05_0026 -
18462749-18462841,18463642-18463726,18463989-18464021,
18464278-18464411
Length = 114
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 244 SARWRNRRYSGPNQRREIPI 185
+A WR RR+S P QRR P+
Sbjct: 2 AAVWRRRRFSTPPQRRRNPL 21
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 5 SDSCHYVRLSSPCFSAPATKQGRFTLRLFLSVPRMASISLTASGWSSLGFRSRKFWS 175
S+ H + L AP G FT ++ ++ +++S+ A W SL +K WS
Sbjct: 200 SELHHSISLPKDLHGAPP---GSFTHQIAETIGKISSVYKMAFFWQSLVLELKKLWS 253
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -3
Query: 258 IHVPSPPGGAIDAIVDQIKGGKFQLKSTDQNFLERKPKDDQPEAVKEMLAILG 100
+HV + + + KGGKF L+ D + LER K + EAV LA LG
Sbjct: 58 LHVGGARTALFNYLFARSKGGKFVLRIEDTD-LERSTKKSE-EAVLSDLAWLG 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,705
Number of Sequences: 37544
Number of extensions: 348121
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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