Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18h07
(596 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid p... 21 9.2
AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatas... 21 9.2
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 9.2
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 9.2
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 46 YNLQWNESEYGGVKDLRITPNKLWKPDI 73
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 114 YNLQWNESEYGGVKDLRITPNKLWKPDI 141
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 247 FSARWRNRRYSGPNQRREIPIKVNRPEL 164
++ +W Y G R P K+ +P++
Sbjct: 114 YNLQWNESEYGGVKDLRITPNKLWKPDI 141
>DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid
phosphatase protein.
Length = 373
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 244 RRYMD*LFLKHHCVVYYV 297
RRY D +FL C+++ +
Sbjct: 118 RRYEDNIFLPEDCLLFTI 135
>AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatase
precursor protein.
Length = 388
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 244 RRYMD*LFLKHHCVVYYV 297
RRY D +FL C+++ +
Sbjct: 133 RRYEDNIFLPEDCLLFTI 150
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 89 FLSVPRMASISLTASGWSSLGFRSRKFWSVD 181
F S+P + L +GW+ L S S+D
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIASFSHRSID 285
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 89 FLSVPRMASISLTASGWSSLGFRSRKFWSVD 181
F S+P + L +GW+ L S S+D
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIASFSHRSID 285
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 19 LREAVVAVLLRAGHEAGPVHVASLP 93
LR + A+ + GH P V SLP
Sbjct: 566 LRLNMSAIQFKLGHPEPPESVCSLP 590
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,149
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -