Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h04
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   1.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   2.7  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   6.2  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 292 TVDYYKVEFRRPIRQIRHDTLSLTRYKSVLGTYFRKINPHRVQAKWQW---TRHICHRSE 462
           T+++ + + +R  R   +   +   Y++    +F+ ++ H V   W W    R +C    
Sbjct: 166 TINFVQQKDKRQKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKG 225

Query: 463 YH 468
           Y+
Sbjct: 226 YY 227


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 289 PTVDYYKVEFRRPIRQIRHDTLSLTRYKSVL 381
           PT+D+    FR   + +  D LSL+ Y S++
Sbjct: 254 PTIDFLSSHFRVDDKLVAKDLLSLSAYSSLI 284


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 155 NYNEAVVFLNSPSSPTEPNPFKR*PSNRLWAQNKFKSDRPVL 280
           N +  +++LN+  +P +   ++  P N  W ++KF SD PVL
Sbjct: 359 NNHILLLYLNALDAPKQLLCYEADPKNLYWDKDKF-SDIPVL 399


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 419 KLNGNGLDIYVIDPNITRTNEFFSGDRFCGTRPMLVASPDQTAR 550
           +++GN +D+Y+ +  I+   +  S DR    +  +VA  D + +
Sbjct: 847 RISGNSIDVYISEYGISNRVDLSSDDRI---KSFIVAPDDSSVK 887


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 394 RKINPHRVQAKWQWTRHICHRSEYH*NKRVLQRRPLLWHTPNAC 525
           +K + + + + + WTR + HR     N+R+++    L H    C
Sbjct: 333 KKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRC 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,319
Number of Sequences: 5004
Number of extensions: 51880
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)