Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h04
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0621 - 5115642-5115881,5116029-5116229,5116333-5116528,511...    31   0.89 
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921...    29   2.7  
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    28   4.8  
01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550     28   6.3  
02_01_0412 - 3005600-3007759                                           27   8.3  
01_05_0709 + 24480660-24481796                                         27   8.3  

>12_01_0621 -
           5115642-5115881,5116029-5116229,5116333-5116528,
           5116747-5117033
          Length = 307

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 357 AEGIMPYLSNWTSKFNLVIVDGRFQCST 274
           A+G+  Y  NW + F LV  D RF+ ST
Sbjct: 74  AQGLHVYAGNWHNSFTLVFEDERFKGST 101


>06_01_1118 -
           9213785-9215051,9215811-9215992,9216075-9216611,
           9216742-9217224
          Length = 822

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 236 RLWAQNKFKSDRPVLHWNRPSTITRLN 316
           RLW  +KFK  R  +HW  P  +   N
Sbjct: 787 RLWQPDKFKVSRDCVHWCLPGAMDACN 813


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 186 APHHLQNPIPSKDNRPTGYGPRTNLKVIGR 275
           AP +  NP P+K+N+P+G   +   K  G+
Sbjct: 198 APENKANPTPAKNNKPSGDKKKAQEKSAGK 227


>01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550
          Length = 318

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 377 C*VPTSEK*TLIECKLNGNGLDIYVIDPNITRTNEFFSGDRFCGTRPML 523
           C VP     T  +C  +G  LD   + P +    EF +GD F G  P+L
Sbjct: 232 CQVPPPPTTTAADCWASGVTLDDVFL-PELVGAGEFPNGDLFGGFGPLL 279


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 561 FVNHRAVWSGDATSIGRVPQKRSPLKNSFVLVIFGSMTYMSSPLPFSLHSM 409
           F N   +   D    G+VP   S L+N  VLV++ +   +S P+P  ++S+
Sbjct: 449 FKNILGLGINDCALSGKVPNWFSKLRNLQVLVLYNNQ--LSGPIPTWINSL 497


>01_05_0709 + 24480660-24481796
          Length = 378

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 355 SLTRYKSVLGTYFRKINPHRVQAKWQ 432
           SL  + SV+ +Y+++  PHR +  W+
Sbjct: 154 SLQLFTSVIDSYYKQRKPHRAEQLWR 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,594
Number of Sequences: 37544
Number of extensions: 310116
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)