Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18h03
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    27   8.7  
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    27   8.7  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 359 PVPEPSDRLRPQPRARGPSSSL 424
           PVP+P    RP PR   P S L
Sbjct: 355 PVPQPQQATRPAPRPVAPKSHL 376


>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 177 TAGGPSVPPQVGYCF 221
           TA GPS+PP V +CF
Sbjct: 146 TAAGPSLPPAVIHCF 160


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 177 TAGGPSVPPQVGYCF 221
           TA GPS+PP V +CF
Sbjct: 146 TAAGPSLPPAVIHCF 160


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 344 GGRAAPVPEPSDRLRPQPRARGPSSSLYEIHAVRVEPEH 460
           G  AA +P+P+ + +PQP A GP +     H  + +P+H
Sbjct: 68  GTAAAALPDPNQQ-QPQPGASGPPAP----HLQQQQPQH 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,605
Number of Sequences: 27780
Number of extensions: 289639
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)