Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18g22
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 47 2e-06
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 45 1e-05
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 36 0.003
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 35 0.008
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 31 0.095
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 27 1.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.5
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 4.7
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 8.3
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 8.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.3
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 46.8 bits (106), Expect = 2e-06
Identities = 31/109 (28%), Positives = 54/109 (49%)
Frame = +1
Query: 202 DHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFID 381
D I F+ ++ +D L D+ +L S ++L+ +I + PV C
Sbjct: 13 DEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQI-SLLLQPV---RCSAS 68
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 528
K+ ++ +G LD L+ GIP +TE+CG +GSGK+Q +Q+ +
Sbjct: 69 KVTSKYLT--TGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCL 115
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 44.8 bits (101), Expect = 1e-05
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Frame = +1
Query: 172 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEAR-NRILTKFS 348
L +EG +T IK + ++ T+ +L L I I EA+ +++L + S
Sbjct: 47 LQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQL-----LLIKGISEAKADKLLGEAS 101
Query: 349 APVINGSCFIDKI---RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
V G + R I+I +G K LD +L G+ +ITEL G +GK+Q+
Sbjct: 102 KLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHT 161
Query: 520 IAINCAKET-----HKTVLYIDTKGDF 585
+A+ C LYIDT+G F
Sbjct: 162 LAVTCQLPIDMGGGEGKCLYIDTEGTF 188
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 36.3 bits (80), Expect = 0.003
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE---- 543
I + RK SI +G + L+ +L GI + +ITE+ G GKTQ++ + +
Sbjct: 85 ISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMG 144
Query: 544 -THKTVLYIDTKGDF 585
V +IDT+G F
Sbjct: 145 GAEGKVAFIDTEGTF 159
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
G+ I+E+CG G GKT LALQI N A + V++++T
Sbjct: 40 GLKRGYISEVCGAPGMGKTSLALQITAN-ALLSGSRVIWVET 80
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.5 bits (68), Expect = 0.095
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 226 QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTIS 405
QS +LD ++ + K S CK + +E+R+ ++T + + + + + S
Sbjct: 183 QSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKS 242
Query: 406 IKSGVKNLDN 435
++S + NL+N
Sbjct: 243 VESIISNLEN 252
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITEL--CGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
+ IK G + LD G PA+ ITE C + G + N A + + +
Sbjct: 120 MGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFV 179
Query: 574 KGDF 585
KGDF
Sbjct: 180 KGDF 183
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 454 PAKTITELCGIAGSGKTQLALQIA 525
P K I L G+AG+GKT LA IA
Sbjct: 414 PDKRIMMLTGLAGAGKTTLAHVIA 437
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 475 LCGIAGSGKTQLALQIA 525
+CG G+GKT LA Q+A
Sbjct: 13 ICGTPGTGKTTLAEQVA 29
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGD 582
G G+GKT +A +A NC+ + K ++ D
Sbjct: 413 GPPGTGKTLMARVLAANCSTKNQKISFFLRKGSD 446
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 340 KFSAPVINGSCFIDKIRKGTISIK 411
K S PV++ F DK+ + TI +K
Sbjct: 98 KISRPVVSEDTFKDKLPRATIPVK 121
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 217 MLFQSRIITILDFLQEDVEKLSNIC 291
++ Q I +L+ LQ DVE L+N C
Sbjct: 52 LIMQDIYIELLELLQVDVEILANRC 76
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 479 HNSVIVLAGIPLLSILSKFF-TPDLILIVPFR 387
HNSV+ + LLS+LS+ TP + L+ PF+
Sbjct: 1209 HNSVVRSSTQKLLSLLSELSNTPIVKLVSPFK 1240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,942
Number of Sequences: 5004
Number of extensions: 43518
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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