Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18g21
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 32 0.057
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 2.1
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 4.9
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 4.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 6.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 8.6
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.9 bits (69), Expect = 0.057
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 90 DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPT 269
D H++R R++E+E NGK R G P + SGN A S P YPT
Sbjct: 3 DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56
Query: 270 AGGGP 284
P
Sbjct: 57 LSHEP 61
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -2
Query: 506 STMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSSMLVRFSSA 372
S+ ASL ++SS L+ SS+ S S + +++ SSS++ SS+
Sbjct: 93 SSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSS 137
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 325 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEESDKK 471
LSE AA R + LEN T +E ++ A L+ SQ K A+ES K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 202 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 89
A+V GTP RP F FP S K+ A +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 503 TMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSS 396
+M R +SSYF++ SS+ + S +S + SSS
Sbjct: 135 SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSS 170
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 358 ERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLAMV 504
E+I ALE N+ ++A + + +A ++ E + K+ ++ +KLA +
Sbjct: 260 EQITTALELPNNVFGKKMANIINDIGRACIVTETNIKELLKIGQKLAQI 308
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 361 ARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQLL 224
AR H RP R + R + + A G PP+ + SG R + L
Sbjct: 82 ARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRARNL 127
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 406 RVAILEAQLSQAKLIA-EESDKKYEEVARKLAMVE 507
+V ILE++L L E ++KY E RKLA++E
Sbjct: 870 KVNILESRLLSNPLHNFSELEEKYAEYLRKLALLE 904
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 506 STMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSSMLVRFSSA 372
S+ +S+ TSS S SS+ S + S +S + SSS + SS+
Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 442 SPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 338
SP + PP + + HPP + AP + R+ PG
Sbjct: 146 SPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,968
Number of Sequences: 5004
Number of extensions: 29301
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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