Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18g16
(196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 0.60
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 0.79
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 24 2.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 23 4.2
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 23 7.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 23 7.4
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ... 23 7.4
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 22 9.7
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 22 9.7
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 22 9.7
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 22 9.7
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 22 9.7
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 0.60
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 121 NSRPTFQTGFHCCSVTETGR 62
N+ F TGF+CC V G+
Sbjct: 2396 NAEIAFSTGFYCCVVNVNGK 2415
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 0.79
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 18 IXVHTLLNSKYNGSXLPVSVTEQQWNP 98
I V TLL +K NGS L V+ W+P
Sbjct: 476 ISVITLLENKENGSRLIVANCHIHWDP 502
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 188 LNWLLGPINITM*ILVTFKHEV*QPSHLSNWIPLL 84
LN +L ++ + +L+ K V QP+H+ +W+ +L
Sbjct: 83 LNIILEFLDSDLEMLIKDKFIVFQPAHIKSWMVML 117
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 64 CQFLSQNSNGIQFERW 111
CQF + SN FE+W
Sbjct: 561 CQFSNSESNKNDFEKW 576
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 168 HKHYHVNTCDLQTRSXTAVPPFKL 97
H +N C LQT+S ++ KL
Sbjct: 504 HLADQMNACSLQTKSRESIKTLKL 527
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 62 PASFCHRTAMESSLKGGTAV 121
P+SF +E L GGTAV
Sbjct: 90 PSSFTGEDVVELQLHGGTAV 109
>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 184
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 121 NSRPTFQTGFHCCS 80
N P FQ F CCS
Sbjct: 66 NLNPNFQAIFECCS 79
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 100 FERWDGCXTSCLKVTSIHM 156
FE W C+KVT I +
Sbjct: 139 FETWTQAVAQCIKVTVIFL 157
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 119 QPSHLSNWIPLLFCDRNWQGXTIIFTV*QCMYXY 18
+PS SNW+ L D+N + + C+Y +
Sbjct: 63 RPSKASNWLAGLMEDKNQRWRRSMEDTHICLYDF 96
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 81 EQQWNPV*KVGRLL 122
E++W PV K+GRL+
Sbjct: 31 EKEWVPVTKLGRLV 44
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 100 FERWDGCXTSCLKVTSIHM 156
FE W C+KVT I +
Sbjct: 140 FETWTQAVAQCIKVTVIFL 158
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 150 NTCDLQTRSXTAVPPFKLDSIAVL 79
+T + T + VPPFK++S+ VL
Sbjct: 33 STSLISTVAPFDVPPFKVESLDVL 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,995
Number of Sequences: 5004
Number of extensions: 12832
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -