Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g16
         (196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   1.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 188 LNWLLGPINITM*ILVTFKHEV*QPSHLS 102
           +NW +G +   +    T K E+ +PS +S
Sbjct: 520 VNWTIGQLEAEVINCTTGKDELGKPSRIS 548


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -2

Query: 57  NHYIYCLTMYVPVFKYCI 4
           N   YCL  ++    YC+
Sbjct: 144 NFKAYCLFSFLNTIVYCV 161



 Score = 19.4 bits (38), Expect = 4.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 26  TYIVKQ*I*WFXPASFCHRTAMESSLKGGTAVXLRV*RSQV 148
           ++IV   + WF       R ++   L G   V  R+  SQ+
Sbjct: 397 SFIVSTILLWFINKIIPIRMSIHDELLGADLVEHRIRHSQI 437


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = +2

Query: 53  WFXPASFCH 79
           W+ P+  CH
Sbjct: 240 WYLPSGGCH 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,410
Number of Sequences: 438
Number of extensions: 1046
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)