Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g14
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    32   0.071
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   2.7  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   3.5  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   6.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.2  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 177 QVEISSEEYKEPSAASVVMSGVIQIQPKVILILNRL 284
           QVE  +EE +E  AA+   +GVIQ+Q  V+  L RL
Sbjct: 423 QVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERL 458


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 203 QGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPR 349
           + A  GFGG   S  D T++     Q    GE+EE V       S + +
Sbjct: 815 KAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEAEAKSPLEK 863


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 144 MVWRLRMNILIYIHLSFILYFFL*WFYMKNNNL 46
           MVW +R+   IY+ +SFI Y  + +F + NN++
Sbjct: 134 MVWVIRILYYIYVAVSFI-YCVMAFFTIFNNHV 165


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +2

Query: 125 ILNRHTMSSLPGFFKVISGRNLVRRVQGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENE 304
           +LN+ TMS L    KV S  +++  + G      G V+  S  T++ S  KQ     EN 
Sbjct: 69  LLNKRTMSGLVHIPKVSSSYSVINTLNGMIGNLFG-VKQASTLTEA-SEQKQ-----ENA 121

Query: 305 EPVRVRR 325
            PV + R
Sbjct: 122 IPVLLTR 128


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 545 FSYKAGALKQCAVRYIILLDLVQLTQRAH 459
           FSYKAG    C+V      +L+  T+ AH
Sbjct: 140 FSYKAGCSDSCSVTVSGTGELIGPTRNAH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,660
Number of Sequences: 5004
Number of extensions: 41607
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)