Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g14
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15998-1|CAA34128.1| 2409|Homo sapiens protein ( H.sapiens mRNA ...    30   7.0  
U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate prote...    30   7.0  
BX641036-1|CAE46022.1| 2060|Homo sapiens hypothetical protein pr...    30   7.0  
AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate pro...    30   7.0  
BC020858-1|AAH20858.1|  104|Homo sapiens Unknown (protein for IM...    29   9.2  

>X15998-1|CAA34128.1| 2409|Homo sapiens protein ( H.sapiens mRNA for
            the chondroitin sulphate proteoglycan versican,  V1
            splice-variant; precursor peptide.  ).
          Length = 2409

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 221  FGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRAI 355
            F G  R YS  +   +  + VM++G  +   R  +  PS VP ++
Sbjct: 947  FSGDFREYSTVSHPIAKEETVMMEGSGDAAFRDTQTSPSTVPTSV 991


>U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate
            proteoglycan versican V0 splice-variant precursor peptide
            protein.
          Length = 3396

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 221  FGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRAI 355
            F G  R YS  +   +  + VM++G  +   R  +  PS VP ++
Sbjct: 1934 FSGDFREYSTVSHPIAKEETVMMEGSGDAAFRDTQTSPSTVPTSV 1978


>BX641036-1|CAE46022.1| 2060|Homo sapiens hypothetical protein
           protein.
          Length = 2060

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 FGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRAI 355
           F G  R YS  +   +  + VM++G  +   R  +  PS VP ++
Sbjct: 598 FSGDFREYSTVSHPIAKEETVMMEGSGDAAFRDTQTSPSTVPTSV 642


>AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate
            proteoglycan 2 (versican) variant protein.
          Length = 3410

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 221  FGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRAI 355
            F G  R YS  +   +  + VM++G  +   R  +  PS VP ++
Sbjct: 1948 FSGDFREYSTVSHPIAKEETVMMEGSGDAAFRDTQTSPSTVPTSV 1992


>BC020858-1|AAH20858.1|  104|Homo sapiens Unknown (protein for
           IMAGE:4333502) protein.
          Length = 104

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 322 SRSPVGRASGHSMLAEKQEIRRGWSQIRGLALGISVCPW 438
           +R P  R  G +MLAE   + R  S  RG  + +  CPW
Sbjct: 15  TRDPGRRPGGAAMLAESPSVPRLGSGTRGAGMELG-CPW 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,647,437
Number of Sequences: 237096
Number of extensions: 1572023
Number of successful extensions: 3258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)