Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g14
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 189 RFLPDMTLKNPGSDDMVWRLRMNILIYIHLSF 94
           +F PD+ + +PG  D  +R R   +  I  ++
Sbjct: 190 KFEPDLDMNHPGFADKEYRARRKFIAEIAFAY 221


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 180 PDMTLKNPGSDDMVWRLRMNILIY 109
           PD+ L N    +   R + N+LIY
Sbjct: 111 PDIVLFNNADGNYEVRYKSNVLIY 134


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 186 FLPDMTLKNPGSDDMVWRLRMNILIYIHLSFIL 88
           FL  +T   P        L ++ILI +H+ F+L
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLL 292


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 186 FLPDMTLKNPGSDDMVWRLRMNILIYIHLSFIL 88
           FL  +T   P        L ++ILI +H+ F+L
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLL 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,194
Number of Sequences: 438
Number of extensions: 2778
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)