Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g12
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    28   1.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   2.8  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   2.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   6.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.7  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    25   8.7  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.7  

>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 394 KKDHLIKYIIKLMNIADDQFQ---RTVASFCDTIDTMIIKF 507
           +  HL++Y+ +++N   ++F    ++ ASF  T D ++ K+
Sbjct: 264 RMQHLVRYLEEVLNAMYEEFDNVFKSEASFIKTFDALVSKY 304


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 397 KDHLIKYIIKLMNIADDQFQRTVASFCDTIDTMIIKFLADLDGMSMENNSRTGALLKS 570
           KD+      KL ++ DD    T+ + C T+  +I     D+   S+ N+S    LL S
Sbjct: 741 KDYSFTIFEKLNDLLDDVKNETLQALCKTVCLLIETTPMDMIYESLLNSSLLSRLLLS 798


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 440 RMINFKELLLVFVTQLIP*LLSFLPIWTGCQWRTIVELVHF*NLEKSMQ 586
           R I F  + L+F++ +IP  +SF  +W     RT   L     LE  ++
Sbjct: 198 RQITFTWITLMFISMIIPIGISFSKLWKKHSRRTAQFLTQLALLEPEVR 246


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 391 DKKDHLIKYIIKL-MNIADDQFQRTVASFCDTIDTMIIKFLAD 516
           D KD +  YI  L +N+ +DQ    +  F D +   +IK +AD
Sbjct: 307 DSKDKI--YISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIAD 347


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 271 AQAMKKGEIDKTWKEMMLKIKEPVFKQDIEIMW 369
           A+A KKG   K  +    KI  P + + +  +W
Sbjct: 459 AEAKKKGFARKVKRIKYSKISHPTYTESVSFLW 491


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 298 DKTWKEMMLKIKEPVFKQDIEIMWHTFERAYDKKDHL 408
           +K  KE + ++ E + KQD   + +T  R  D++DH+
Sbjct: 158 NKPDKEHVERLVESIKKQDQRRLKNTKRRGTDEEDHI 194


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 471 TSNSSLKLIIRYVHQLNNVLYEVIFFIISPFKCM 370
           +S+SS   I + VH+  NV+ + +F + SP + M
Sbjct: 549 SSDSSSSTIQQRVHEDINVIRDTLFDVSSPLELM 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,823
Number of Sequences: 5004
Number of extensions: 38795
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)