Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g11
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   3.7  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    26   3.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   8.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   8.5  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 326 KTEGYYTISCARSCTVKIPTPAIRFP 403
           K  GYY  +  R  ++ +PTP   FP
Sbjct: 130 KKSGYYERTSTRKRSLTVPTPRTSFP 155


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 179 RLRPTRKAAARILLHVFQTSAKRTIVSCILNSD 81
           R +  ++   R+LL     + K TI+ C+LN D
Sbjct: 8   RQQKLKEREVRVLLLGLDNAGKTTILKCLLNED 40


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 311 ITSELKTEGYYTISCARSCTVKIPTPAIRFPQI 409
           IT+ L+ EG   +  A   T  +P P I FP +
Sbjct: 238 ITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLV 270


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 420  GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEEST 521
            G++ SA   L    ++ANQ  L+P  +N F E++
Sbjct: 1130 GITDSAFQLLASIPALANQENLVPAFFNKFREAS 1163


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 146 ILLHVFQTSAKRTIVSCILNSDALCTPPNCFTSF 45
           +L  V   +AK  ++ C+ NS      PNC + F
Sbjct: 414 VLPEVNPLTAKMEVIDCLRNSFWAALRPNCVSYF 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,312
Number of Sequences: 5004
Number of extensions: 45093
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)