Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g07
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.23 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   2.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   6.4  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    25   8.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   8.5  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 312 ENEAEDLFSDSESSCFDATESEISEEVKDTTL 407
           E E EDL S+ E    +++E EI EEV+++T+
Sbjct: 36  EEELEDLNSEDEFYQSNSSEDEIEEEVQESTI 67


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 324 EDLFSDSESSCFDATESEISEEVKDT 401
           EDL S S  S F+  E EI EE +DT
Sbjct: 38  EDLASISSESEFNGFEDEIDEENEDT 63


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 291 SCGHCEGENEAEDLFSDSESSCFDATE 371
           S GH E ENE  DL +  + S  DATE
Sbjct: 285 SFGHPEFENEDFDLETSEDDSSDDATE 311


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 315 NEAEDLFSDSESSCFDATESEISEEV 392
           +E+E   S+SESS  +++ SE  EEV
Sbjct: 101 SESESSSSESESSSSESSSSESEEEV 126


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 93  YFCKCEITIXXXXXXXXLSKETIFDNIRVPI 1
           Y CKC++TI           + +FD I + +
Sbjct: 73  YTCKCDVTIPKEVEHAFAEIQKVFDTIDIVV 103


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 225 QLPFEIDEKLKSEL------CFAETLVISCGHCEGENEAEDLFSDSESSCFDATESEISE 386
           +L +++ E  K ++      CF E   +S  +   E ++ED ++D E    D  E  +S 
Sbjct: 317 ELDYQLGEVFKDQIIPLAIDCFLEEGDLSDFNQMDEEDSEDAYTDEEDLSSD-DEEILSS 375

Query: 387 EVKD 398
           E+ D
Sbjct: 376 EISD 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,139
Number of Sequences: 5004
Number of extensions: 40794
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)