Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g07
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024...    31   0.93 
02_01_0091 + 646299-649082                                             31   0.93 
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928...    28   6.5  

>05_07_0224 +
           28500745-28500978,28501933-28502332,28502416-28502480,
           28502633-28502692,28502865-28503014,28503386-28503541,
           28503648-28503785,28503874-28503947,28504172-28504273,
           28505415-28505604,28505756-28505830
          Length = 547

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 240 IDEKLKSELCFAETLVISCGHCEGENEAEDLFSDSESSCFDATESEISEEV 392
           I + L S     ++  IS   C GE   +D   DS +   D T  E+SE+V
Sbjct: 492 ISKPLMSARSLLKSESISASKCIGEKPKQDRDEDSLTESMDETADEVSEKV 542


>02_01_0091 + 646299-649082
          Length = 927

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 11  RILSKIVSFDKKKKTNNQ---SIVISHLQKYSF*T 106
           R+ +K V FD+  K+NNQ   SI + HL  YSF T
Sbjct: 741 RVTTKWVGFDRILKSNNQKSDSINLDHLPPYSFET 775


>01_06_0832 +
           32291454-32291537,32291584-32291661,32292081-32292804,
           32294259-32294446,32294623-32294682,32295516-32295959
          Length = 525

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 222 TQLPFEIDEKLKSELCFAETLVISCGHCEGE----NEAEDLFSDSESSCFDATESEISEE 389
           T +P  + E  K  +  AE  +I     E E    NE + + SDSE +    T  +  +E
Sbjct: 428 TSVPMNVVEADKHPISVAEVEIIDKSVVEEELVVKNETKSIPSDSEKANLHITSDDDDKE 487

Query: 390 VKD 398
           V+D
Sbjct: 488 VED 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,573
Number of Sequences: 37544
Number of extensions: 204482
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)