Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18g07
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ... 31 0.48
AC006761-4|AAL32243.1| 498|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81059-2|CAB02926.1| 240|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.9
U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein. 28 5.9
U37430-6|AAB52672.1| 414|Caenorhabditis elegans Hypothetical pr... 28 5.9
AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA bin... 28 5.9
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 5.9
AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal... 28 5.9
>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
protein Y92H12A.5 protein.
Length = 1375
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 274 AKQSSDLSFSSIS-KGNCVFKSIRVILEVDILFF*QTFLVRSDYC*IISKLQL 119
AK + L+F S+S KGN ++ I ++++D+LF + F+V C + KL L
Sbjct: 445 AKWMAKLAFGSLSTKGN-YYRRIMGLMQIDVLFSRENFIV-DGKCFFVDKLNL 495
>AC006761-4|AAL32243.1| 498|Caenorhabditis elegans Hypothetical
protein Y41G9A.4a protein.
Length = 498
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 249 SHQFQKATVCLNLLGLYWKLTFYFFSKLF**EVIIAKSSPNCNCVLI 109
S++F T+ +LG+ + Y F++ +II +S P CN +L+
Sbjct: 414 SNEFYYPTILFAVLGIAACVFIYLFTQKHHERLIIFQSQPECNNILL 460
>AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical
protein Y41G9A.4b protein.
Length = 860
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 249 SHQFQKATVCLNLLGLYWKLTFYFFSKLF**EVIIAKSSPNCNCVLI 109
S++F T+ +LG+ + Y F++ +II +S P CN +L+
Sbjct: 414 SNEFYYPTILFAVLGIAACVFIYLFTQKHHERLIIFQSQPECNNILL 460
>Z81059-2|CAB02926.1| 240|Caenorhabditis elegans Hypothetical
protein F11F1.4 protein.
Length = 240
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +1
Query: 478 ISTFFPIVINQLLNEVVKLV*SLSMVFRK 564
IST F + I QLLNEV +V SLS VF K
Sbjct: 157 ISTVFNL-IEQLLNEVADVVRSLSDVFGK 184
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Frame = +3
Query: 162 KKVC*KNKMSTSNITLIDLNTQLPFEIDEKLKSELCFAETLVISCGHC---------EGE 314
+ VC N+++T+ T T P E+ K E V + G E
Sbjct: 454 RPVCCSNEITTTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTTVGKSKKTKATTTTEEP 513
Query: 315 NEAEDLFSDSESSCFDATESEISEEVKDTT 404
+ ED++ D + + E E+S K TT
Sbjct: 514 EDDEDVYVDDDEEGTEEEEEEVSTTEKSTT 543
>U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein.
Length = 346
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 5 GTRILSKIVSFDKKKKTNNQSIVISHL 85
G ++L ++SF+K K TNN+ HL
Sbjct: 170 GDQLLKHVISFEKTKLTNNEVDKTGHL 196
>U37430-6|AAB52672.1| 414|Caenorhabditis elegans Hypothetical
protein K09F5.1 protein.
Length = 414
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +3
Query: 177 KNKMS--TSNITLIDLNTQLPFEIDEKLKSELCFAETLVISCGHCEGENEAEDLFSDSES 350
KNK+ S DLN LP D + +V S HC+ N+ ED+ +
Sbjct: 103 KNKLQDFVSGDLPADLNRMLP-NYDSFQSLPILSGGGVVNSSSHCQQNNDLEDMLKRKRT 161
Query: 351 SC 356
+C
Sbjct: 162 NC 163
>AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA
binding protein protein.
Length = 346
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 5 GTRILSKIVSFDKKKKTNNQSIVISHL 85
G ++L ++SF+K K TNN+ HL
Sbjct: 170 GDQLLKHVISFEKTKLTNNEVDKTGHL 196
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Frame = +3
Query: 162 KKVC*KNKMSTSNITLIDLNTQLPFEIDEKLKSELCFAETLVISCGHC---------EGE 314
+ VC N+++T+ T T P E+ K E V + G E
Sbjct: 454 RPVCCSNEITTTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTTVGKSKKTKATTTTEEP 513
Query: 315 NEAEDLFSDSESSCFDATESEISEEVKDTT 404
+ ED++ D + + E E+S K TT
Sbjct: 514 EDDEDVYVDDDEEGTEEEEEEVSTTEKSTT 543
>AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal
protein 9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 5 GTRILSKIVSFDKKKKTNNQSIVISHL 85
G ++L ++SF+K K TNN+ HL
Sbjct: 170 GDQLLKHVISFEKTKLTNNEVDKTGHL 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,325
Number of Sequences: 27780
Number of extensions: 220011
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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