Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g04
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    29   0.46 
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   2.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   3.3  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   5.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.9  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 343  RKMYWDYELEEMAELWARQ---CQKRHDECRNTIRFNAL 450
            + M ++  L+ + + W ++   CQK  D   NT+RF AL
Sbjct: 1454 KNMQYENNLDSLKKTWRKRLEGCQKNVDVWHNTLRFRAL 1492


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 471 GTHVHVLKCIKPNSIPAFVVTFLT 400
           G  +   + ++PN IP F+VTF T
Sbjct: 344 GVDIMSQRLLQPNDIPVFIVTFRT 367


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -1

Query: 391 PTVPPSLRVRNPNTSSSCWWRVVDQLPSP*RCCLYDGCVKAKSDISSN*SYRTHKVSGSA 212
           P  P      NPN     +  +V QLP      +  G +   S I SN S  + K SG +
Sbjct: 269 PNYPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSSGPS 328

Query: 211 Y 209
           Y
Sbjct: 329 Y 329


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 HTMCVAFNKQSPRLYASGMTNWMRYQILLLH 279
           + + V     SP   +S +  W++Y+ILL++
Sbjct: 334 YALVVDLQPDSPPQLSSNLITWLKYKILLIY 364


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 151 YCSHPDCSLKNQHTMCVAFNKQSPRLYASGMTNWMRYQILLLHNR 285
           Y +  D     +  + +AF+K +  L   G + W +Y ++L H +
Sbjct: 502 YKAKVDQDTSAKQGLLLAFSKSTSDLQVVGKSGWHKYWVVLDHGK 546


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 578 PCLNDHTCSDCSTRDPENHAPTASANN*ASVTLGTTGRTS 459
           P  +  + S  +T  P N+  + +AN  +S+T  +TG+TS
Sbjct: 255 PPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTS 294


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 278 TTVIETTSLWAWKLVNH 328
           TTVI+T  L +W ++NH
Sbjct: 864 TTVIDTLFLESWSILNH 880


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 468 THVHVLKCIKPN 433
           T+VH ++CIKPN
Sbjct: 638 TNVHYIRCIKPN 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,399
Number of Sequences: 5004
Number of extensions: 62646
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)