Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g04
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    30   1.9  
07_01_0207 + 1528951-1529499                                           29   2.6  
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    29   3.4  
06_03_0565 - 22308074-22309510,22309670-22309723                       29   4.5  
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688           28   5.9  
11_08_0052 + 28082124-28082170,28082340-28082455,28083151-280831...    28   7.8  
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    28   7.8  
08_01_0105 + 756998-757225,757311-758597                               28   7.8  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 303 YGLGSWSTTRHQHEEDVLGLRTRR 374
           +GLGSW   R Q + ++L  RTRR
Sbjct: 68  FGLGSWQLFRRQEKIEMLDYRTRR 91


>07_01_0207 + 1528951-1529499
          Length = 182

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
 Frame = +1

Query: 340 MRKMYWDYELEEMAELWARQCQ---KRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLAD 510
           + ++ WD  +   AE +A QCQ   +       T  +     + V P     T +   A 
Sbjct: 51  VEEVTWDDTVAAYAESYAAQCQADCQPVSTNNGTATYGENIYVVVGPAGGNDTSSSPAAA 110

Query: 511 AVGAWFSGSRVLQSEHVWSFRHGN-CSAPGG--CNSH----WYSTAALG 636
           AVGAW        +E  W     N CSAP G  C+ +    W +T A+G
Sbjct: 111 AVGAW-------AAEEQWYDPDTNGCSAPAGESCDHYTQLVWNATTAIG 152


>06_01_1053 -
           8328902-8329156,8330538-8330804,8330895-8332343,
           8332461-8332619,8333246-8333372,8333444-8333775,
           8333859-8334593,8334735-8335073,8335160-8335313,
           8335405-8336154,8336242-8336372
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 397 DAPTVPPSLRVRNPNTSSSCWWRVVDQLPSP*RC 296
           D P+V P  RV  P++S    WR +   P P RC
Sbjct: 9   DGPSVSPPERVPTPSSSRYAGWRRLSS-PGPLRC 41


>06_03_0565 - 22308074-22309510,22309670-22309723
          Length = 496

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 519 SNCVSQ*LSFG--NFRNYGTHVHVLKCIKPNSIPAFVVTFLTLTRPQFRHL 373
           ++C++Q  +F         T V  LK + P S+P F VTF+ L  P + H+
Sbjct: 268 NSCLAQLSTFSVEQAATMDTRVGGLK-VPPASLPVFPVTFIILLAPVYDHI 317


>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
          Length = 308

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 581 LPCLNDHT-CSDCSTRDPENHAPT 513
           L C N HT CS+C  R  ENH PT
Sbjct: 72  LQCPNGHTICSNCKHR-VENHCPT 94


>11_08_0052 +
           28082124-28082170,28082340-28082455,28083151-28083173,
           28083260-28083362,28083650-28083741
          Length = 126

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 498 LSFGNFRNYGTHVHVLKCIKPNSIPAFVVTFLTL 397
           L+F NF   G H   + C+K  S+P F   F+ +
Sbjct: 37  LAFSNFSKDGCHNKDIFCVKAVSLPQFHFPFIVV 70


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 307 GLEAGQPPATNMRKMYWDYELEEMAE 384
           G   G+P     RK++WD+  +E+AE
Sbjct: 194 GAVKGKPHLCPARKLFWDWSWQELAE 219


>08_01_0105 + 756998-757225,757311-758597
          Length = 504

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 190 YADSSKNSRGENNTVSICQYYCLYKAY 110
           +AD  + S  ++   S+C +YC Y  Y
Sbjct: 217 FADRHRGSYSDSLASSVCPFYCSYSGY 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,863
Number of Sequences: 37544
Number of extensions: 426600
Number of successful extensions: 1149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)