Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g04
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.66 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.87 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.1  

>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 658 ATKTPSRRPKLPLNTNENCIHRGRYSY 578
           A +  SR PK+  + + N IH   Y Y
Sbjct: 70  AERERSREPKIISSLSNNTIHNNNYKY 96


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 17/88 (19%), Positives = 43/88 (48%)
 Frame = +1

Query: 223 RLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMRKMYWDYELEEMAELWARQC 402
           +LY   M  + +YQ  L   ++ D I  G+       + +  ++ D+ ++  A    +  
Sbjct: 436 QLYKKVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLFTDFYVDLDAVTGHQSQ 495

Query: 403 QKRHDECRNTIRFNALQNMDVRPVVPKV 486
           Q++ ++ ++ +R + L+ +D +P   K+
Sbjct: 496 QQQEEQTQSRVRAH-LKRLDHQPYQYKI 522


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSY 578
           SR PK+  + + N IH   Y Y
Sbjct: 75  SREPKIISSLSNNTIHNNNYKY 96


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSY 578
           SR PK+  + + N IH   Y Y
Sbjct: 76  SREPKIISSLSNNTIHNNNYKY 97


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSY 578
           SR PK+  + + N IH   Y Y
Sbjct: 76  SREPKIISSLSNNTIHNNNYKY 97


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSY 578
           SR PK+  + + N IH   Y Y
Sbjct: 76  SREPKIISSLSNNTIHNNNYKY 97


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSY 578
           SR PK+  + + N IH   Y Y
Sbjct: 76  SREPKIISSLSNNTIHNNNYKY 97


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 208 NKQSPRLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMR 345
           N ++ RLY   ++N+ R    + +N  R  + MGL   Q    N++
Sbjct: 18  NSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 63


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 643 SRRPKLPLNTNENCIHRGRYSYRA*TTIHALTVAPV 536
           SR PK+  + + N IH   Y+ +    I  +   PV
Sbjct: 309 SREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPV 344


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 109 NMLCKDNNTDRYLQYCSHPDCSLK 180
           N  C D++ ++Y  +C+  +  LK
Sbjct: 189 NKSCTDSDIEKYKMFCNLENVKLK 212


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 208 NKQSPRLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMR 345
           N  + RLY   ++N+ R    +++N     + +GL+  Q    N++
Sbjct: 31  NPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLK 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 403 DIDAPTVPPSLRVRNPNT 350
           D + P+V P LR  NP T
Sbjct: 63  DREQPSVYPLLRFENPET 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,157
Number of Sequences: 438
Number of extensions: 4899
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)