Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18g02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.59 
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   5.5  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   9.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   9.5  
SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces ...    25   9.5  

>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 156 LGGVFRFFDRYR*PEEPEKH-SCCEDGS--CAW 245
           +G V R +D  R P +PE+  +CC+ G   C W
Sbjct: 42  IGNVSRIYDGIRVPPKPEEPLNCCQSGCAICVW 74


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 481 YIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMD 639
           YI   H++ SEN+A F++ K    PR   L    +R   +   +S+  +PL+D
Sbjct: 466 YIRIGHKMGSENYAAFYQVK----PRLSTLTNGSFR--MILRAVSQTLRPLLD 512


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 185 SIKESKYSSQVTNGNS-LRSASTPGGYS 105
           S++ S+++SQVTNG + L      GG+S
Sbjct: 179 SVRASRFTSQVTNGKAELLHIPVVGGHS 206


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 2   NVIVTPKFNVPFCRISIIFYINLS 73
           +V+    FN+PF  I I FYI  S
Sbjct: 483 SVVKRVAFNIPFLLICIFFYIQSS 506


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 523 EPSSPRPSDVRNLCN 479
           E S+P P++V+N+CN
Sbjct: 529 EYSTPNPAEVQNICN 543


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 298 HGGCRTPFPTEYRRSLCNQAQLPSS 224
           +G   TPF T Y    CN   LP +
Sbjct: 371 YGNTNTPFNTAYESFGCNHTVLPEA 395


>SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 568 LGYYHWRHGTVRSNISRNYKPLMDP 642
           LG YHWR   +R   S  Y   + P
Sbjct: 77  LGIYHWRASAIRRRGSGPYDDRLGP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,942
Number of Sequences: 5004
Number of extensions: 61253
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)