Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f24
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    28   1.4  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.8  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    27   2.4  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   3.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   4.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   4.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   4.3  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   5.6  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   9.9  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   9.9  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 458 FVLSNSGYTVERFRRGLSCI 399
           FV++N GYT+ER   GL  +
Sbjct: 474 FVINNKGYTIERLIHGLHAV 493


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 193 PWQEWSDHYTCHRYRCEIRDG 255
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
 Frame = -3

Query: 459 IRSVKQRVHCGALSSGAVLHLRRGV-VDKPTAAN-IAAIRDILIFD-VFVAFQ-----CV 304
           IR V+  V    +++G V  LR+G+ + K T    I + R +L    +F  ++     CV
Sbjct: 194 IREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPWGCV 253

Query: 303 FRYFWFSTSDS 271
            R+ W+STS S
Sbjct: 254 ERFLWYSTSYS 264


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 458 FVLSNSGYTVERFRRGL 408
           F+++N GYT+ER   GL
Sbjct: 473 FIINNDGYTIERLIHGL 489


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 193  PWQEWSDHYTCHRYRCEIRDGKYFIAAV---GCRKPKIPENALE--CHEYIEDENVA 348
            P+ EWS HY+    R      K F++ +     RK + P   LE     Y + +N+A
Sbjct: 849  PYSEWSAHYSALVNRISPVLDKLFVSIIEKARSRKAEFPAKQLEVAIQTYCDGQNLA 905



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 277  GCRKPKIPENALECHEYIEDEN 342
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = -3

Query: 522 SVLFGGVSVYFD-GVTLIVVFPIRSVKQRVHCGALSSGAVLHLRRGVVDKPTAANIAAIR 346
           SVLF  VS+           + +   K   +C   +SG    LR   +  P   ++ +  
Sbjct: 115 SVLFNLVSLLSRMAANHASAYTVDDYKAAANCLQCASGIAKLLRESFIHAP-GRDLDSNF 173

Query: 345 DILIFDVFV--AFQCVFRYFWFSTSDSSYEVFPVSDLASVA 229
            + I+++F+  A +CV  +  FS SDS+      + +AS A
Sbjct: 174 LLGIYNLFLGQAQECVLGHMSFSASDSNMNYSLAAKIASSA 214


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 328 IEDENVADGSDISSRRFIDYPA--PQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKING 501
           I D + A+     S  F DY     + Q   + + + +Y   D  ++   +    + ING
Sbjct: 14  IADFDEANDEAYESVGFHDYADYFSRKQRKLQNQNAALYKSIDEDSKSDLFHGLAIAING 73

Query: 502 YTPEKYT 522
           YT   YT
Sbjct: 74  YTKPSYT 80


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 295 IPENALECHEYIEDENVAD 351
           +PE AL CH Y+   N+A+
Sbjct: 372 VPEYALGCHNYLNLPNIAN 390


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +1

Query: 310 LECHEYIED---ENVADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQS 480
           L+C    ED   EN+  G+D+  +R       ++Q      +     L  R NR+   + 
Sbjct: 176 LQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPLSKEKADKLITRHNRKLKLKK 235

Query: 481 HPVKINGYTPEKYTSY 528
             +K  G T E   S+
Sbjct: 236 RKLKELGITLESDVSH 251


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 6   LRNSLKKQGVLTFSYYGWRPENT 74
           +R+  ++ GVL   +YGW+PEN+
Sbjct: 570 VRSKGQEDGVL---FYGWKPENS 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,781
Number of Sequences: 5004
Number of extensions: 60584
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)