Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18f24
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1043 + 34078015-34079541 32 0.48
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.63
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 31 0.83
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 31 1.1
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 31 1.1
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 30 1.9
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 30 1.9
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 28 5.9
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 5.9
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 7.7
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 7.7
>01_06_1043 + 34078015-34079541
Length = 508
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 241 EIRDGKYFIAAVGCRKPKIPENALECHEYIEDENVADGSDISSRRFIDYPAPQM 402
E+RD +Y AA+ P A++ H ED+ + DG+ + F+ Y A M
Sbjct: 357 ELRDMQYLHAAITESMRLYPPVAMDSHSCKEDDFLPDGTFVGKGWFVSYSAYAM 410
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV + +++ +PW W D+ T RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 462 PIRSVKQRVHCGALSSGAVLHLRRGVVDKPTAANIAAIRDILI 334
P +V + CG L++GA+LHL V AA A R ++I
Sbjct: 20 PALAVASNIQCGPLAAGAMLHLAAAVASN-AAAGKAQARGLVI 61
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 178 RKGYQP-WQEWSDHYTCHRYRCEIRDGKYFIAAVGCRKPKIPENAL-ECHEYIEDENVAD 351
++ Y+P W + H + +R K F+ V K P NA E + IE +
Sbjct: 217 KEKYEPLWLKGGKHCDLELFPEYLRHLKKFVNTV--EKSPSPRNAWRESLDRIEPSRKSV 274
Query: 352 GSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNR-EHNYQS 480
SRR +D+ P + + RR++S P DR EH Y +
Sbjct: 275 DCFEPSRRSVDFFEPSRKSTDRREKSR--PTRDRMRGVEHRYSN 316
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV + + + +PW W D+ ++ RC +++ KY
Sbjct: 31 QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 262 FIAAVGCRKPKIPENAL-ECHEYIEDENVAD 351
F + +G + EN L +C+EY++ EN++D
Sbjct: 200 FASKLGLAQSDFSENMLKQCNEYVKQENISD 230
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 115 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEI 246
+ +PA +A S AC + Q + E S TCH RC+I
Sbjct: 266 MTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDI 309
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 413 PDESAPQCTRCLTERIGNTT 472
PD S C +CL + +GNTT
Sbjct: 218 PDMSGGDCRQCLQDLVGNTT 237
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 151 YQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
+Q CV K + + +PW W D+ RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,925
Number of Sequences: 37544
Number of extensions: 405771
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -