Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18f24
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical... 27 2.8
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF099923-4|AAC68808.2| 303|Caenorhabditis elegans Hypothetical ... 28 5.2
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 28 6.9
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 28 6.9
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z37140-6|CAA85501.1| 190|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 27 9.1
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 27 9.1
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 27 9.1
>AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical
protein Y73F8A.34a protein.
Length = 485
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 301 ENALECHEYIEDENVADGSDISSRRFIDY 387
+N +C+ Y+ED+N D +S + Y
Sbjct: 315 KNHAQCNRYVEDDNKTDSRSLSRKNLQRY 343
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +1
Query: 202 EWSDHYTCHRY 234
+W +H C+RY
Sbjct: 313 DWKNHAQCNRY 323
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 142 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 282
+ Y ACV R YQ + W+D + YRC DG+ + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 232 YRCEIRDGKYFIAAVGCRKPKIPENALECHEYI 330
Y+CEIR GK AVGC I EN + ++ I
Sbjct: 243 YQCEIRPGKRSHRAVGC---SIVENGRDINKVI 272
>AF099923-4|AAC68808.2| 303|Caenorhabditis elegans Hypothetical
protein H09G03.1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 471 LSKSPRQNKRIHPRKVHFVFFQ*RKEFV*F--QSQTIAQSVLIEVVTQTVLYLPLMILF 641
+SK Q+ + HP + VF++ + + + + +T+ Q L V QT+L LPL +F
Sbjct: 188 VSKKSYQSDKGHPLIIETVFYRMKSKLLLLLKEYRTLFQYSLPHVSYQTILILPLSHVF 246
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 407 TAPDESAPQCTRCLTERIGNTTIKV 481
T PD + C C + +GNTTI++
Sbjct: 126 TLPDRNLVHCEECGSVTVGNTTIQI 150
>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
protein B0198.3 protein.
Length = 1050
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 418 RKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNVK 546
R++ V P+ + R+ + HP++IN +P + Y S + K
Sbjct: 811 RRQVMVTPVTADSGRQSQHDDHPLRINNASPNPSSGYDSFSSK 853
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 337 ENVADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKING 501
E VA+ + SSR F D + SPR P D R+H Y + P ++G
Sbjct: 686 ERVAEQLERSSREFYDDQGISTRSSPRAS-----PQLDNM-RQHKYNTLPANVSG 734
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 337 ENVADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKING 501
E VA+ + SSR F D + SPR P D R+H Y + P ++G
Sbjct: 686 ERVAEQLERSSREFYDDQGISTRSSPRAS-----PQLDNM-RQHKYNTLPANVSG 734
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 388 PAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPE-KYTSYFSN 537
P P ++ P ++ +V F+ T Y S N Y PE + T+ FSN
Sbjct: 352 PLPHLESLPPKRTLSVPSYFNNTTYRPFYSSTDQTSNLYIPESQRTTIFSN 402
>Z37140-6|CAA85501.1| 190|Caenorhabditis elegans Hypothetical
protein ZK899.7 protein.
Length = 190
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 229 RYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIEDENVADGSDISSRRFIDY 387
RYR + D ++ IAA + K N ++C E + + + D +D I++
Sbjct: 139 RYRAALTDPQH-IAAYRANEVKRISNEIQCDEILLENGLIDPTDFGRSLMIEF 190
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 388 PAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNN 540
P P + +P+ + +T P++D++N + + GY P+ TS S N
Sbjct: 261 PTPAVPTNPQVQVTTPRPMYDQSNTGYGNAGYQNNY-GYQPQPITSTSSYN 310
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 388 PAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPE-KYTSYFSN 537
P P ++ P ++ +V F+ T Y S N Y PE + T+ FSN
Sbjct: 352 PLPHLESLPPKRTLSVPSYFNNTTYRPFYSSTDQTSNLYIPESQRTTIFSN 402
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 317 ATNTSKMRMSRMAAILAAVGLSTTPRRRCRTAPDESAPQCTRCLTERIGNTTIKVTPSK 493
A+++S ++ MAA+ AA ++TP + + S P + + + +T++ T S+
Sbjct: 2835 ASSSSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQ 2893
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,568,871
Number of Sequences: 27780
Number of extensions: 347009
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -