Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f24
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.37 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +1

Query: 331 EDENVADGSDISSRRFIDYPAPQMQDSPRRKRST----VYPLFDRTNREHNYQSHPVKIN 498
           E E  +  ++ S R++ +    + +D   R+RS     +  L ++T   +N   +    N
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNN 336

Query: 499 GYTPEKYTSYFSNNVK 546
            Y    Y + ++NN K
Sbjct: 337 NYNNNNYNNNYNNNCK 352


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 442 LFDRTNREHNYQSHPVKINGYTPEK-YTSY 528
           L +RTNR+ N +S   + N Y  E+ Y  Y
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKY 58


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 442 LFDRTNREHNYQSHPVKINGYTPEK-YTSY 528
           L +RTNR+ N +S   + N Y  E+ Y  Y
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKY 58


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 448 DRTNREHNYQSHPVKINGYTPEKYTSYFSN 537
           DRT RE + ++  +  N Y  + Y + +++
Sbjct: 291 DRTERERSKETKIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 448 DRTNREHNYQSHPVKINGYTPEKYTSYFSN 537
           DRT RE + ++  +  N Y  + Y + +++
Sbjct: 302 DRTERERSKETKIISSNNYNYKNYNNNYNS 331


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 366 QPSVYRLPRAADAGQPPTKALHSVPAV*QNESGTQLSKSPRQ 491
           QPS ++ P+A   G PP  +    P       G   S++P Q
Sbjct: 24  QPSPHQSPQAPQRGSPPNPSQGPPPG---GPPGAPPSQNPSQ 62


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 217 YTCHRYRCEIRDGKYFIAAVGCRKPKIP-ENALECHEYIED 336
           + C +Y  +IRD K     + CR+  +P E    C +  E+
Sbjct: 610 FNCTQY--QIRDHKDVTQCISCRQGTVPDETHSACRDIPEE 648


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 608 NGTISTVNDII*ILK 652
           NGT S +NDI+  LK
Sbjct: 14  NGTKSEINDIVGFLK 28


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/57 (19%), Positives = 24/57 (42%)
 Frame = +1

Query: 370 RRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNN 540
           R++ +    + +D   R+RS    +    +  +NY ++    N Y       Y++ N
Sbjct: 57  RKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNIN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,696
Number of Sequences: 438
Number of extensions: 4482
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)