Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18f23
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T... 42 1e-04
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 36 0.004
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.3
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 1.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 3.1
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 5.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.2
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 25 7.2
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 9.5
>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 68
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 22 MVNVMKGVL-VECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDD 198
M KG+L VECDP +KQ +L++DE +++++DE L ++ +E ++A ++
Sbjct: 1 MPRAQKGLLLVECDPTVKQLILNMDEQ---SPGIVIEEIDEERLLVNESRLEQVKAELER 57
Query: 199 LMDQLSIPVHD 231
+++ + V +
Sbjct: 58 RLEENTYQVEE 68
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +1
Query: 502 RKTFAQLVEEDASFRSKPPNYLSAQAPPSKFPERHFCAVCGFPSNYTC 645
RKTF ++E + R Y + A PS P R FC VCG+ Y C
Sbjct: 71 RKTFVNYLDETPNSR-----YNTCVAKPSYKPPRKFCNVCGYWGKYAC 113
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 370 QDNFHEDPHA-DLVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFR 546
Q N HE + D+ +S + D P+ ++ S +K + K A ++ D +FR
Sbjct: 392 QTNVHEPSNVCDIQISSQSNCIPD----PSYERTEASFTIFKAKLSKVIASVL--DRAFR 445
Query: 547 SKPPNYLSAQAPPSKF 594
PP+Y +A +F
Sbjct: 446 FTPPSYSEVEALTEQF 461
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 506 KRLRSW*KRMQVLDQNLLTTCPHKRH---LLNFPSDISVL 616
K + SW K + +D NL CP FP+D+S++
Sbjct: 749 KEISSWKKASEYMDTNLGKKCPENAFQGWTWQFPNDLSIM 788
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 547 SKPPNYLSAQAPPSKFPERHFCAVCGFPS 633
S PN +A PPS P RH + P+
Sbjct: 98 SSKPNQTTAMPPPSNNPSRHVSSTSNKPA 126
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 521 SCANVFRNRIL*YSALLDFFFLVGFSLESANFGTFFDITKSACGSS 384
SC +V N Y+ LDF+ +GF + A+FGT C S
Sbjct: 10 SCYSVVANTEDTYNQTLDFYQKLGFK-KVASFGTSDSDNARVCNES 54
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -3
Query: 464 FFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLTL 285
F++VG S+ G+ F + S + AST+ + T++ T SA+ +
Sbjct: 111 FYIVGGEGISSTTGSTFQSMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSF 170
Query: 284 PDSREV 267
P S +V
Sbjct: 171 PYSTDV 176
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 70 KQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVD 195
KQF D + LQD DE F + DI ++ +A+ D
Sbjct: 303 KQFFTRSDLENRIWTAPFLQDSDEIRFFENIDIFDSTKAKQD 344
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 554 GFDLKLASSSTSCANVFRNRIL*YSALLDFFFLVGFSLESANFGTF 417
G+++ +A SC NR + ++DFF+ + L+S F T+
Sbjct: 351 GYEMFIAPYP-SCPRRVMNRTFITAVIIDFFYYLAGYLQSMYFTTY 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,386
Number of Sequences: 5004
Number of extensions: 55309
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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