Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18f23
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 54 1e-07
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 38 0.005
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 31 0.80
11_05_0036 - 18514964-18515042,18515268-18515385,18515820-185158... 29 3.2
03_02_0560 + 9462996-9463454 29 4.2
06_01_0610 - 4415080-4415461,4415872-4416851 28 5.6
12_01_0202 - 1513835-1514282,1514506-1514571,1515420-1515508,151... 28 7.4
11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489... 28 7.4
01_01_0358 - 2819235-2819696 28 7.4
06_03_0312 - 19471670-19471874,19472608-19472807 27 9.8
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 27 9.8
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 27 9.8
01_01_0331 + 2685802-2686263 27 9.8
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +1
Query: 22 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQA 186
MVN +KG+ + CD M QF+++L+ ++ KFIL LD TH+F+ + E +++
Sbjct: 349 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRS 403
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 556 PNYLSAQAPPSKFPERHFCAVCGFPSNY 639
PNYL+ Q+PPS +P + +C + GF + Y
Sbjct: 57 PNYLNIQSPPSIYPPKRYCDITGFEAPY 84
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +1
Query: 442 NEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSAQAPPSKFPERHFCAVC 621
NE R +A R R++ + S S P AQAPPS+ P F V
Sbjct: 1051 NEPKMRSSSRVAAMSNAGRRRRSLTSIAPSPVSSSSFPSGAREAQAPPSQLPSWKFSQVL 1110
Query: 622 G 624
G
Sbjct: 1111 G 1111
>11_05_0036 -
18514964-18515042,18515268-18515385,18515820-18515878,
18516006-18516205
Length = 151
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 568 SAQAPPSKFPERHFCAVCGFP 630
S + P K P+++FC VCG P
Sbjct: 71 SDRTPFDKLPDKYFCPVCGAP 91
>03_02_0560 + 9462996-9463454
Length = 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 403 LVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSA 573
L SK K + +K RKK KS E YK+ K Q V D SK + +++
Sbjct: 37 LPASKASSKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQ-VHPDIGISSKAMSIMNS 92
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 630 WKPTNSTEMSLGKFRRWRL 574
+KPT S EM L KF RW L
Sbjct: 419 YKPTTSLEMGLKKFVRWYL 437
>12_01_0202 -
1513835-1514282,1514506-1514571,1515420-1515508,
1518011-1518352
Length = 314
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 206 SIKSSTRACRVSTISADMNKCVSSRS*RINFLP 108
S + T ACR S +SAD SS + FLP
Sbjct: 43 SFTTPTDACRCSAVSADFQAAASSNAVWERFLP 75
>11_01_0610 +
4889158-4889386,4889584-4890297,4890814-4891166,
4891619-4891830,4892633-4892889,4892984-4893162,
4893901-4893948
Length = 663
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 406 VMSKKVPKFADSNEKPTRK-KKSKSAEYYKMRFRKTFAQLVE--EDASFRSKPPNYLSAQ 576
V KKV D +K K+ K+ +MRF + AQLVE ++ F S Y+ +
Sbjct: 290 VNQKKVSATGDKKHASKKKSKRKKTGSTCEMRFLNSTAQLVEPAKNEKFASFNLEYVEVE 349
Query: 577 APP 585
P
Sbjct: 350 DKP 352
>01_01_0358 - 2819235-2819696
Length = 153
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 418 KVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSA 573
K K + +K RKK KS E YK+ K Q V D SK + +++
Sbjct: 43 KAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQ-VHPDIGISSKAMSIMNS 93
>06_03_0312 - 19471670-19471874,19472608-19472807
Length = 134
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 148 LFISADIVETLQARVDDLMDQLSIPVHD 231
LF+ D+ T++ +DD++D+L PV D
Sbjct: 6 LFVKLDVTNTIEHGLDDIVDRLP-PVRD 32
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +2
Query: 410 CQRRCRNSQTLMRNQLGRRSLKALNIIRCDFGKRLRSW*KRMQVLDQNLLTTCPHKRHLL 589
C RC+ +++ LGRR LNI+ DF + R R + +D + T P L
Sbjct: 594 CGDRCQVLRSIKPTTLGRRFFVCLNILDDDFMEPPRRCQYR-EWIDTRRVLTPPSHVVQL 652
Query: 590 NFPSDISVLFVGFHR 634
P V F R
Sbjct: 653 ELPEQYRVTKARFER 667
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 547 SKPPNYLSAQAPPSKFPERHFCAVCGFPS 633
SK P +L P +FPE++ + G P+
Sbjct: 543 SKNPLFLGVLPPKERFPEKYVALISGVPA 571
>01_01_0331 + 2685802-2686263
Length = 153
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 418 KVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSA 573
K K + +K RKK KS E YK+ K Q V D SK + +++
Sbjct: 43 KAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQ-VHPDIGISSKAMSIMNS 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,659
Number of Sequences: 37544
Number of extensions: 346638
Number of successful extensions: 893
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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