Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f23
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical ...    80   1e-15
AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical ...    52   4e-07
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   2.2  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   2.2  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   2.2  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical p...    28   5.0  
AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68011-1|CAA92012.1|  584|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.2 protein.
          Length = 71

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = +1

Query: 22  MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 201
           MVNV KGVLV  DPA +Q L+HLD++  LG KFI+++LD+THLFI  +IV  L+ +V+ +
Sbjct: 1   MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQI 60

Query: 202 MDQLSIPVHDK 234
           M+ ++    DK
Sbjct: 61  MENMNPEAVDK 71


>AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical
           protein CD4.7 protein.
          Length = 116

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
 Frame = +1

Query: 391 PHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTF-AQLVEED-ASFRSKPPNY 564
           P A      K  K    + +  R++K    E+ K RF+K+F A ++E+  A   S  P+Y
Sbjct: 5   PSAKKAKKVKEDKSGIVHGEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILDSAEPDY 64

Query: 565 LS------AQAPPSKFPERHFCAVCGFPSNYTC 645
                   + APPS+ P R FCAVCG  S Y C
Sbjct: 65  RRVNAYQLSSAPPSEKPARKFCAVCGIISKYCC 97


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 370 QDNFHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYK 492
           +D F E P + +     +    D  +KP ++K+ KS+E YK
Sbjct: 552 EDQFPEGPSSSVAADTTLEFGEDQEKKPKKEKRDKSSEEYK 592


>U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical
           protein B0304.2 protein.
          Length = 218

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 424 PKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSAQAPPSKFPER 603
           PKF  ++   TRK+    + Y + R   TF+ LV       + P   L  Q   S    R
Sbjct: 135 PKFFTNHGSTTRKRTENGSIYSRHRLGATFSPLVAGAKRKMATPSQSLKRQEKQSPLESR 194

Query: 604 H 606
           H
Sbjct: 195 H 195


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +2

Query: 275 ANLEESKMPREERFWMMWRENVEREKQLRP*NKITFMKTHMQI*LCQRRCRNSQTLMRNQ 454
           A +EE KM R  R     RE  +++ +L+        K  MQ+    RRC  S+ L R  
Sbjct: 347 AEIEEMKM-RNNRLVEQLREKSQQQSKLQ----CQLHKAEMQVNALSRRCALSEALDRLT 401

Query: 455 LGRRSLKALNIIRCDFGKRLRSW*KRMQ 538
           L  R  K+         +RLR +  +MQ
Sbjct: 402 LDERMEKSATSWIKKIEERLRIFENQMQ 429


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 373 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 471
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 131 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 163


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 373 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 471
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 373 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 471
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 415 KKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQ-LVEED 534
           KKVP+ ++  E+ +   ++ +  +YK++ RKT +Q  VEED
Sbjct: 83  KKVPEVSEVPEECSENSQNDALSFYKLK-RKTKSQDFVEED 122


>Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical
           protein C49C3.8 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 152 NKCVSSRS*RINFLPSARVSSKCSKNCFIAGSHSTRTP 39
           +K V  R  R+N L   R   +CSK  FI+ S  +  P
Sbjct: 150 SKTVPYRKRRMNDLEDLRKIKECSKRAFISNSDQSEVP 187


>AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical
           protein C50A2.2 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 412 SKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKT 510
           +KKVP+ +   +    KKKSK A +Y+ +  KT
Sbjct: 161 NKKVPRRSQFTDPDAPKKKSKGARHYRDQNLKT 193


>Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 467 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 288
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 287 LPDSREVILM*QLV 246
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 467 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 288
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 287 LPDSREVILM*QLV 246
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 467 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 288
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 287 LPDSREVILM*QLV 246
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 467 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 288
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 287 LPDSREVILM*QLV 246
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z68011-1|CAA92012.1|  584|Caenorhabditis elegans Hypothetical
           protein T21B6.1 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 448 KPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSAQAPPSK 591
           K + KKKS S EY        F   VEE+    +  P     + PP K
Sbjct: 497 KKSGKKKSTSTEYVSKGLPVVFPDEVEENDPTHAGTPMLAREERPPLK 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,147
Number of Sequences: 27780
Number of extensions: 313581
Number of successful extensions: 877
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)