Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f19
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    81   2e-16
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    42   6e-05
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    29   0.42 
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    28   1.3  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   3.9  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   3.9  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   6.8  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   9.0  

>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = +1

Query: 295 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ-ASKSKM 471
           ++LS +GLR DGRR +E+R  +C++G+    +GSA++E GNTKVL  V GP +   KSK 
Sbjct: 5   EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64

Query: 472 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQ 567
             +   VN + ++A+FST + K R + DR+ Q
Sbjct: 65  RADRTFVNVEINIASFSTIDVKKRFKSDRRIQ 96


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +1

Query: 331 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSM 510
           R  +  R+I  KLG  T+  GS+Y E    K+   V GP + SK+     +  +NC++ +
Sbjct: 30  RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88

Query: 511 ATFSTGERK 537
           + FST  R+
Sbjct: 89  SPFSTSVRQ 97


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 364 KLGVFTQPDGSAYLEQGNTKVLAAVYGP 447
           ++G+ ++ DGS+  +QG+ +V+  V GP
Sbjct: 3   RIGILSRSDGSSEWKQGSARVICGVNGP 30


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 310 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 438
           +GLRLDGR+ ++ R +  + G   +  G   +  G+T+V+A +
Sbjct: 21  KGLRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARI 60


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 302 SRVKDYVLTGGDPMNYVG 355
           +++KDY ++ GDP+N+ G
Sbjct: 618 AKLKDYYVSQGDPVNFFG 635


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 220 KTIQHIEQFIIF*CVFVRS*IMPAADL--LSSQGLRLDGRRPNELRRIRCKLGVFTQPDG 393
           KT+  ++Q      +F +  I P   L  L +Q +R DGR  +E R I       +  +G
Sbjct: 2   KTVSGVKQLSFTPSIFKK--ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANG 59

Query: 394 SAYLEQGNTKVLAAV 438
           SA +  G    +  +
Sbjct: 60  SAIIRAGENVFVCGI 74


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 92  KYII-FVQLFFKLYFVGYVIVFFF 24
           +YI+ ++ +   +Y+ GYVI+F F
Sbjct: 215 QYIVAYIAMLLAMYYNGYVILFLF 238


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 361 CKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA 456
           C  G FT+ D S + +Q     LA+VY  H A
Sbjct: 111 CIPGFFTELDPSVFEKQMRQNYLASVYVCHAA 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,450
Number of Sequences: 5004
Number of extensions: 46247
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)