Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18f19
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 55 5e-08
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 55 5e-08
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 50 1e-06
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 46 2e-05
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 39 0.004
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 38 0.007
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 31 0.75
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 28 5.3
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286... 28 7.0
12_01_0453 - 3572745-3572918,3573370-3573430,3573646-3573783,357... 27 9.2
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +1
Query: 319 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 498
R DGR ++ R + G T GSAY E G TKV+ +V+GP ++ K+ + ++ +NC
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 499 QYSMATFST 525
S TF+T
Sbjct: 101 NVSYTTFAT 109
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +1
Query: 319 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 498
R DGR ++ R + G T GSAY E G TKV+ +V+GP ++ K+ + ++ +NC
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 499 QYSMATFST 525
S TF+T
Sbjct: 99 NVSYTTFAT 107
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +1
Query: 319 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 498
R DGR PN+LR C + GSA QG+T VLAAVYGP ++ + E +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 499 QYSMATFSTGERK 537
+ T G+++
Sbjct: 65 VWKPMTGQIGKQE 77
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +1
Query: 436 VYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQE 570
+ G Q +++++ +V C+Y MA FSTG+R+ +P+GDR+S E
Sbjct: 92 IEGEVQNKGQQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTE 136
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 313 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASK---SKMST- 477
G R DGR P ELR I + G+ + GSA +G T+ LA V G +Q ++ + + T
Sbjct: 409 GKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTE 468
Query: 478 EAVVVNCQYSMATFSTGE 531
E+ QY+ S GE
Sbjct: 469 ESKSFYLQYTFPPSSVGE 486
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 310 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 438
+GLR+DGR+ +E+R + C+ + GSA +G+T+VL V
Sbjct: 370 KGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTV 412
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 310 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 438
+ +R D RRP E R L + GSA + G+T +LA++
Sbjct: 37 ESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 340 NELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 474
NE+R + KL T+P + G+ V+AA P A+ + +S
Sbjct: 31 NEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAAAPAPAAAAGVS 75
>12_01_0999 -
10128057-10128143,10128346-10128516,10128602-10128677,
10128787-10128917,10129007-10129111,10129215-10129391,
10129475-10129623,10129715-10129826,10131819-10132070,
10132323-10132444,10132537-10133371,10133386-10133489,
10133582-10133647,10133766-10133888,10133975-10134151,
10134217-10134387,10134478-10134957,10135357-10135369
Length = 1116
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 415 NTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQENVNAS 585
NT A + P AS SK E +VN Q + AT E +NR + + + ++ V ++
Sbjct: 63 NTPCSATLRQPTTASLSK---EFEIVNAQLAEATNDAREERNRKQREYRQKKKVGST 116
>12_01_0453 -
3572745-3572918,3573370-3573430,3573646-3573783,
3573882-3574003,3574078-3574233,3575337-3575477,
3575643-3576044
Length = 397
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 391 GSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVV 492
G+ +L TK+LA Y P A K +ST VVV
Sbjct: 203 GAVFLTPLLTKILAGAYVPVDAVKLSLSTLQVVV 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,640
Number of Sequences: 37544
Number of extensions: 276542
Number of successful extensions: 580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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