Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f19
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...   105   3e-23
Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell death-re...    43   2e-04
AC006815-1|AAL32260.1|  241|Caenorhabditis elegans Arp2/3 comple...    40   0.001
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    37   0.010
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    29   2.7  
AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82093-8|CAI79277.1|  136|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score =  105 bits (251), Expect = 3e-23
 Identities = 48/92 (52%), Positives = 61/92 (66%)
 Frame = +1

Query: 295 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 474
           +++S  G R+DGRRP ++R I  +LG+    +GS YLE GNTKVL AVYGP++   SK  
Sbjct: 2   NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61

Query: 475 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQE 570
            +   + CQYS   FS  ERKNR RGDRKS E
Sbjct: 62  EDKCAIVCQYSATKFSGLERKNRTRGDRKSTE 93


>Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical
           protein C14A4.5 protein.
          Length = 214

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 346 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY 504
           LR +RC+L      DGSA   QG T + A+  GP     SK S EA+ ++  Y
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY 57


>AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell
           death-related nuclease 5 protein.
          Length = 214

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 346 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY 504
           LR +RC+L      DGSA   QG T + A+  GP     SK S EA+ ++  Y
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY 57


>AC006815-1|AAL32260.1|  241|Caenorhabditis elegans Arp2/3 complex
           component protein 4 protein.
          Length = 241

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 331 RRPNELRRIRC-KLGVFTQPDGSAYLEQGNTKVLAAVYGP 447
           +R N   R  C K GVF   DGS Y E GNT+VLA + GP
Sbjct: 31  KRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGP 70


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +1

Query: 313 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 438
           G+R DGRRP+E R I   + ++ +  G +  ++G T+V++ V
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +1

Query: 313 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVV 492
           G R D R   E R ++  +G      G+A    GNTKV+AAV     A  S M     V+
Sbjct: 21  GKRFDFRSLEEFRDVKLVVGAEV---GTAICTIGNTKVMAAV-SAEIAEPSSMRPHKGVI 76

Query: 493 NCQYSMA 513
           N    ++
Sbjct: 77  NIDVDLS 83


>AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical
           protein F43E2.5 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 302 SRVKDYVLTGGDPMN 346
           ++VKDY L+GGDP N
Sbjct: 190 NKVKDYALSGGDPRN 204


>Z82093-8|CAI79277.1|  136|Caenorhabditis elegans Hypothetical
           protein ZK39.9 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 469 MSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQENVNASP 588
           +S   +V+   Y++A+ S+   ++   GDR  +EN   SP
Sbjct: 5   LSVTVLVIGISYTVASSSSESCEDSREGDRVGRENGGCSP 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,191
Number of Sequences: 27780
Number of extensions: 266940
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)