Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f19
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 429 CSRVWTPSGFKIEDVDRSCSC 491
           CS     SG KI  ++RSC C
Sbjct: 57  CSSYLQVSGSKIWQMERSCMC 77


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 261 TLKNNELFNMLNCFVKNICFLLCYIIIVDSVFKIRGDSN 145
           TL+N+E+ +    F  N+  L C I  V  + K +G +N
Sbjct: 99  TLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINN 137


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 YNIVKSKYF*QNNSTY*TIHYFLM 260
           YNI+  +++  N++TY T+   LM
Sbjct: 235 YNILLRRHYSMNSTTYVTLTIVLM 258


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 48  RLCYRVFFQGS 16
           RLC++VF +GS
Sbjct: 187 RLCFQVFLEGS 197


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 48  RLCYRVFFQGS 16
           RLC++VF +GS
Sbjct: 187 RLCFQVFLEGS 197


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 255 KNNELFNMLNCFVKNICFLLC 193
           K  ELF  + CFV  +  L C
Sbjct: 413 KRKELFIAIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 255 KNNELFNMLNCFVKNICFLLC 193
           K  ELF  + CFV  +  L C
Sbjct: 466 KRKELFIAIVCFVSYLIGLFC 486


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 471 VDRSCSCQLPIQYG 512
           VDR C+   P++YG
Sbjct: 137 VDRFCAITKPLKYG 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,796
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)